BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
RNA expressioni
Consensus:1.2 nTPM
HPA Brain:5.2 nTPM
GTEx:1.2 nTPM
FANTOM5:12.1 Scaled Tags Per Million
Mouse:1.5 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells0246810nCPM

CAUDATE - Antibody stainingi
Antibody HPA007548
Glial cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 5.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.6
2290 Female, age 72, unknown 5.3
1857 Female, age 85, left hemisphere 5.0
1781 Male, age 74, unknown 4.8
1854 Male, age 80, left hemisphere 4.8
2289 Male, age 61, right hemisphere 4.6
2846 Female, age 79, unknown 4.4
2481 Female, age 94, left hemisphere 4.1
2288 Male, age 75, left hemisphere 4.0
Globus pallidus, externus
nTPM: 3.5
1996 Male, age 80, right hemisphere 4.0
2395 Male, age 75, both hemispheres 3.6
2646 Male, age 61, right hemisphere 3.4
2772 Female, age 79, unknown 3.4
2567 Female, age 72, unknown 3.0
Globus pallidus, internus
nTPM: 3.4
2111 Female, age 85, right hemisphere 3.9
2037 Male, age 80, right hemisphere 3.7
2778 Female, age 91, both hemispheres 3.6
2287 Male, age 75, right hemisphere 3.5
2483 Female, age 94, right hemisphere 3.5
2566 Female, age 72, unknown 3.0
1818 Male, age 74, unknown 2.9
Nucleus accumbens
nTPM: 5.2
1783 Male, age 74, unknown 6.7
2824 Male, age 61, right hemisphere 5.9
2732 Male, age 80, right hemisphere 5.6
1856 Female, age 91, right hemisphere 5.5
1806 Female, age 85, left hemisphere 5.3
2698 Female, age 72, unknown 4.9
2391 Female, age 94, left hemisphere 4.6
2286 Male, age 75, left hemisphere 3.2
Nucleus basalis of Meynert
nTPM: 4.1
2484 Female, age 94, left hemisphere 4.9
2393 Male, age 80, right hemisphere 4.6
2821 Male, age 75, both hemispheres 3.6
2569 Male, age 61, both hemispheres 3.4
Nucleus of the diagonal band
nTPM: 4.6
1979 Male, age 74, unknown 5.1
1812 Female, age 91, both hemispheres 4.9
2029 Male, age 61, right hemisphere 4.8
2775 Male, age 80, right hemisphere 4.1
2195 Female, age 85, both hemispheres 3.8
Putamen
nTPM: 4.0
1937 Female, age 91, right hemisphere 4.6
1838 Male, age 80, right hemisphere 4.3
2482 Female, age 94, left hemisphere 4.3
2466 Female, age 79, unknown 4.0
2489 Female, age 72, unknown 3.8
1829 Male, age 74, unknown 3.7
2647 Male, age 75, left hemisphere 2.9
Septal nuclei
nTPM: 4.7
1960 Male, age 74, unknown 6.1
2059 Female, age 85, both hemispheres 5.3
2031 Female, age 72, unknown 4.9
2199 Male, age 80, right hemisphere 4.5
2394 Male, age 61, left hemisphere 4.4
2009 Female, age 91, both hemispheres 4.0
2629 Female, age 94, right hemisphere 4.0
Stria terminalis, bed nucleus
nTPM: 3.4
2486 Female, age 94, both hemispheres 4.1
1974 Female, age 91, both hemispheres 3.9
2201 Male, age 74, unknown 2.4

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 1.2
GTEx sample id Sample description nTPM
0.71.01.30.22.20.00.51.01.52.02.53.03.54.04.5
Brain - Caudate (basal ganglia)
Average nTPM: 1.1
Samples: 300

Max nTPM: 4.5
Min nTPM: 0.2
Std nTPM: 0.5
Median nTPM: 1.0
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 4.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 4.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 3.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 3.1
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 3.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 3.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 2.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 2.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 2.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 2.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 2.4
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 1.2
Samples: 285

Max nTPM: 7.4
Min nTPM: 0.4
Std nTPM: 0.6
Median nTPM: 1.1
GTEX-1477Z-0011-R6b-SM-GJ3QX 60-69 years, male 7.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 6.1
GTEX-11ZU8-0011-R6b-SM-GJ3PZ 60-69 years, male 4.6
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 4.3
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 2.6
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 2.4
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 2.4
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 2.2
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 2.1
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 2.1
GTEX-1GN1U-0011-R6a-SM-CKZNO 50-59 years, female 2.1
Show allShow less
0.60.91.20.02.00123456789
Brain - Putamen (basal ganglia)
Average nTPM: 1.0
Samples: 254

Max nTPM: 9.1
Min nTPM: 0.0
Std nTPM: 0.8
Median nTPM: 0.9
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 9.1
GTEX-11H98-0011-R7a-SM-GHWOI 50-59 years, male 8.0
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 5.6
GTEX-13OW7-0011-R7b-SM-H6613 50-59 years, male 3.4
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 3.0
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 2.8
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 2.6
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 2.2
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 2.1
GTEX-1N2DW-0011-R7a-SM-EY5YE 50-59 years, male 2.1
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 2.0
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 12.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 7.8
FF:10164-103B2 76 years, female 7.8
Nucleus accumbens
Scaled Tags Per Million: 12.1
FF:10037-101F1 23-56 years, mixed 12.1
Putamen
Scaled Tags Per Million: 7.5
FF:10176-103C5 60 years, female 7.5
Globus pallidus
Scaled Tags Per Million: 4.9
FF:10161-103A8 76 years, female 5.2
FF:10175-103C4 60 years, female 4.7

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 1.5
Mouse sample Sample description nTPM
1.11.21.31.01.30.00.10.20.30.40.50.60.70.80.91.01.11.21.3
 		Caudate putamen
nTPM: 1.2
Samples: 4

Max nTPM: 1.3
Min nTPM: 1.0
Sample A Male 1.0
Sample B Male 1.3
Sample C Female 1.1
Sample D Female 1.3
1.11.11.21.01.10.00.20.40.60.81.01.21.4
 		Septum
nTPM: 1.2
Samples: 4

Max nTPM: 1.5
Min nTPM: 1.0
Sample A Male 1.0
Sample B Male 1.1
Sample C Female 1.5
Sample D Female 1.1
1.31.41.61.02.10.00.20.40.60.81.01.21.41.61.82.0
 		Ventral forebrain
nTPM: 1.5
Samples: 4

Max nTPM: 2.1
Min nTPM: 1.0
Sample A Male 1.0
Sample B Male 2.1
Sample C Female 1.4
Sample D Female 1.5

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
69782820 Antisense, RP_050505_03_G12, Mouse strain C57BL/6J (56 days, male) 0.0
74743271 Antisense, RP_060220_04_E07, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
69782820 Antisense, RP_050505_03_G12, Mouse strain C57BL/6J (56 days, male) 0.0
74743271 Antisense, RP_060220_04_E07, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org