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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
21.9
nTPM
HPA Brain:
28.4
nTPM
GTEx:
21.9
nTPM
FANTOM5:
40.8
Scaled Tags Per Million
Pig:
18.2
nTPM
Mouse:
27.9
nTPM
Allen mouse:
3.6
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
28.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 26.9
2411
Female, age 72, unknown
31.7
2019
Male, age 18, unknown
31.4
1870
Female, age 42, unknown
29.8
1830
Male, age 51, unknown
28.6
1833
Male, age 53, unknown
27.5
2219
Male, age 76, both hemispheres
26.9
1827
Male, age 72, unknown
26.0
2828
Female, age 72, unknown
25.8
2586
Male, age 75, left hemisphere
21.2
2666
Male, age 74, left hemisphere
20.0
Dorsal raphe nucleus nTPM: 26.4
2750
Male, age 76, both hemispheres
28.6
2047
Male, age 72, unknown
28.5
2016
Female, age 72, unknown
27.2
1828
Male, age 53, unknown
25.2
2298
Female, age 72, unknown
22.7
Inferior colliculus nTPM: 25.3
1848
Female, age 42, unknown
26.1
2097
Female, age 72, unknown
25.8
1890
Male, age 53, unknown
24.9
2849
Male, age 72, unknown
24.3
Median raphe nucleus nTPM: 27.8
2220
Male, age 76, midline
27.8
Periaquaductal grey, anterior nTPM: 25.2
1947
Male, age 18, unknown
29.3
1795
Male, age 51, unknown
23.4
2502
Female, age 75, unknown
23.0
Periaquaductal grey, dorsal nTPM: 24.9
2464
Female, age 72, unknown
27.2
2850
Male, age 76, both hemispheres
25.4
1831
Male, age 72, unknown
24.0
1840
Male, age 53, unknown
22.8
Periaquaductal grey, lateral nTPM: 26.5
2272
Male, age 74, both hemispheres
29.1
2140
Male, age 76, both hemispheres
25.3
2053
Male, age 18, unknown
25.0
Pretectal area nTPM: 26.4
2316
Male, age 76, right hemisphere
30.4
2667
Female, age 75, unknown
28.2
1815
Male, age 53, unknown
27.7
1817
Female, age 42, unknown
27.5
2273
Male, age 74, both hemispheres
27.3
2007
Male, age 72, unknown
26.5
2407
Male, age 75, both hemispheres
25.7
2224
Female, age 72, unknown
25.5
1944
Female, age 72, unknown
24.5
2825
Male, age 18, unknown
24.0
1816
Male, age 51, unknown
23.4
Red nucleus nTPM: 28.4
2823
Male, age 76, right hemisphere
33.9
1865
Male, age 51, unknown
32.1
1904
Male, age 53, unknown
31.5
1821
Female, age 72, unknown
28.6
2227
Male, age 72, unknown
28.6
2725
Female, age 75, unknown
27.5
2769
Male, age 72, unknown
27.5
1954
Female, age 42, unknown
27.3
2785
Male, age 18, unknown
27.1
2503
Female, age 72, unknown
26.8
2588
Male, age 74, left hemisphere
26.4
2584
Male, age 75, left hemisphere
23.3
Substantia nigra nTPM: 26.3
2590
Female, age 75, unknown
28.6
1851
Male, age 51, unknown
28.2
1941
Male, age 53, unknown
27.9
1916
Female, age 42, unknown
27.6
2699
Male, age 18, unknown
25.7
2583
Male, age 75, right hemisphere
25.6
1889
Female, age 72, unknown
25.4
2409
Female, age 72, unknown
25.4
2241
Male, age 72, unknown
25.2
2665
Male, age 74, both hemispheres
23.2
Superior colliculus nTPM: 25.6
1895
Male, age 76, right hemisphere
29.9
1913
Female, age 42, unknown
29.5
1995
Male, age 72, unknown
27.2
2087
Female, age 72, unknown
26.2
2587
Male, age 74, left hemisphere
25.2
2668
Female, age 75, unknown
24.5
1839
Male, age 51, unknown
24.2
1796
Male, age 53, unknown
23.8
2261
Male, age 18, unknown
22.7
2664
Male, age 75, both hemispheres
22.3
Ventral tegmental area nTPM: 26.2
2410
Female, age 72, unknown
28.5
2223
Female, age 72, unknown
26.5
1915
Female, age 42, unknown
26.0
2218
Male, age 76, both hemispheres
25.9
1942
Male, age 51, unknown
25.3
2021
Male, age 53, unknown
25.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
21.9
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 21.9
Samples: 139
Max nTPM: 33.6
Min nTPM: 15.6
Std nTPM: 3.0
Median nTPM: 21.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
33.6
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
32.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
30.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
29.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
28.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
28.5
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
28.2
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
28.2
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
27.9
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
27.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
27.8
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
26.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
26.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
26.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
26.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
25.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
25.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
25.2
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
25.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
24.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
24.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
24.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
24.3
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
24.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
24.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
23.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
23.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
23.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
23.7
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
23.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
23.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
23.3
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
23.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
23.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
23.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
23.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
23.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
23.0
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
23.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
23.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
22.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
22.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
22.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
22.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
22.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
22.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
22.3
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
22.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
22.3
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
22.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
22.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
22.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
22.0
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
21.9
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
21.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
21.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
21.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
21.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
21.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
21.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
21.6
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
21.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
21.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
21.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
21.6
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
21.5
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
21.5
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
21.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
21.3
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
21.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
21.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
21.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
21.2
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
21.2
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
21.1
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
21.0
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
21.0
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
21.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
20.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
20.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
20.8
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
20.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
20.8
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
20.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
20.7
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
20.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
20.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
20.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
20.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
20.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
20.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
20.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
20.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
20.3
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
20.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
20.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
20.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
20.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
20.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
20.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
19.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
19.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
19.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
19.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
19.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
19.8
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
19.7
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
19.7
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
19.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
19.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
19.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
19.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
19.5
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
19.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
19.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
19.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
19.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
19.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
19.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
18.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
18.9
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
18.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
18.8
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
18.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
18.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
18.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
18.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
18.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
18.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
18.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
18.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
18.4
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
18.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
18.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
18.0
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
17.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
17.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
17.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
15.6
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
27.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 27.9
Samples: 4
Max nTPM: 31.3
Min nTPM: 25.1
Sample A
Male
27.1
Sample B
Male
28.1
Sample C
Female
25.1
Sample D
Female
31.3
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.