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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1054.5 nTPM
HPA:719.6 nTPM
GTEx:1054.5 nTPM
FANTOM5:501.5 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA005985
Glandular cells Not detected



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

719.6
overview
Male, age 65
Small intestine sample 232
nTPM: 884.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 705.2
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 644.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 643.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1054.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1054.5
Samples: 207

Max nTPM: 2331.2
Min nTPM: 476.1
Std nTPM: 300.2
Median nTPM: 1027.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 2331.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 2178.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 2044.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 2021.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1770.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1714.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1707.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1646.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1638.3
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1613.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1574.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1548.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1530.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 1496.0
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1471.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1469.7
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 1459.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1451.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1449.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1438.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1432.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1425.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1417.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1416.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1409.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1406.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1387.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1358.4
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 1353.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1340.9
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 1320.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1304.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1300.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1299.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1299.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1289.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1285.6
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 1281.7
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1278.4
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 1276.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1269.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1263.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1259.8
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1254.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1248.1
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 1243.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1228.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1225.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1224.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1223.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1223.2
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 1220.6
GTEX-1192X-2526-SM-59868 50-59 years, male 1218.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1206.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1201.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1198.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1197.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1188.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1184.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1183.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1174.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1168.6
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1168.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1164.1
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 1163.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1155.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1147.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1143.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1141.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1135.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1134.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1128.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1126.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1114.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1112.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1108.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1105.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1104.4
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1099.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1092.9
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1091.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1089.2
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 1088.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1085.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1081.9
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 1078.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1077.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1073.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1072.2
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1072.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1070.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1064.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1058.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1056.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 1055.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1055.1
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1050.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1049.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1048.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1041.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1041.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1033.9
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 1031.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1027.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1026.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1024.6
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 1018.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1018.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1015.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1013.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1008.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1005.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1005.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1001.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1000.2
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 984.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 981.0
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 971.4
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 970.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 969.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 962.5
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 951.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 951.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 949.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 939.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 938.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 937.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 934.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 933.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 925.1
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 924.9
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 913.9
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 912.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 912.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 909.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 909.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 908.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 898.6
GTEX-178AV-1226-SM-GOR11 40-49 years, male 895.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 893.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 892.0
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 889.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 889.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 889.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 880.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 874.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 873.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 869.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 868.4
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 867.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 866.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 861.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 858.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 856.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 852.7
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 848.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 842.6
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 840.7
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 834.5
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 834.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 832.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 817.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 816.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 815.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 815.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 812.5
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 810.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 809.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 806.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 805.2
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 804.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 793.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 781.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 776.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 771.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 759.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 759.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 754.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 753.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 751.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 749.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 748.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 741.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 736.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 734.9
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 720.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 719.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 715.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 701.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 699.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 690.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 688.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 679.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 672.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 658.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 644.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 632.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 623.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 603.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 593.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 589.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 575.7
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 563.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 533.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 532.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 526.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 476.1
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

501.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 501.5
FF:10024-101D6 15,40,85 years, mixed 501.5

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