MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.7 nTPM
HPA Brain:51.1 nTPM
GTEx:25.7 nTPM
FANTOM5:48.0 Scaled Tags Per Million
Pig:58.2 nTPM
Mouse:43.6 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 51.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.3
2586 Male, age 75, left hemisphere 57.0
2666 Male, age 74, left hemisphere 44.2
2828 Female, age 72, unknown 39.3
1827 Male, age 72, unknown 38.0
1870 Female, age 42, unknown 36.3
2411 Female, age 72, unknown 33.4
1830 Male, age 51, unknown 32.9
1833 Male, age 53, unknown 32.0
2219 Male, age 76, both hemispheres 30.8
2019 Male, age 18, unknown 28.8
Dorsal raphe nucleus
nTPM: 36.2
2016 Female, age 72, unknown 45.8
2047 Male, age 72, unknown 37.8
1828 Male, age 53, unknown 34.8
2298 Female, age 72, unknown 34.5
2750 Male, age 76, both hemispheres 28.4
Inferior colliculus
nTPM: 39.5
1848 Female, age 42, unknown 40.9
2849 Male, age 72, unknown 40.1
2097 Female, age 72, unknown 38.8
1890 Male, age 53, unknown 38.2
Median raphe nucleus
nTPM: 25.6
2220 Male, age 76, midline 25.6
Periaquaductal grey, anterior
nTPM: 51.1
1947 Male, age 18, unknown 63.4
2502 Female, age 75, unknown 47.5
1795 Male, age 51, unknown 42.3
Periaquaductal grey, dorsal
nTPM: 40.3
1840 Male, age 53, unknown 51.0
2464 Female, age 72, unknown 38.2
1831 Male, age 72, unknown 37.4
2850 Male, age 76, both hemispheres 34.4
Periaquaductal grey, lateral
nTPM: 35.5
2053 Male, age 18, unknown 43.4
2272 Male, age 74, both hemispheres 32.0
2140 Male, age 76, both hemispheres 31.0
Pretectal area
nTPM: 36.0
2407 Male, age 75, both hemispheres 44.4
2825 Male, age 18, unknown 42.0
1816 Male, age 51, unknown 37.4
2667 Female, age 75, unknown 36.3
1815 Male, age 53, unknown 36.2
1817 Female, age 42, unknown 36.0
1944 Female, age 72, unknown 34.1
2273 Male, age 74, both hemispheres 33.4
2224 Female, age 72, unknown 33.3
2007 Male, age 72, unknown 32.5
2316 Male, age 76, right hemisphere 30.0
Red nucleus
nTPM: 37.0
2584 Male, age 75, left hemisphere 43.8
1821 Female, age 72, unknown 41.9
2503 Female, age 72, unknown 41.6
2588 Male, age 74, left hemisphere 40.3
1954 Female, age 42, unknown 40.1
1904 Male, age 53, unknown 38.4
2769 Male, age 72, unknown 37.5
2227 Male, age 72, unknown 37.0
1865 Male, age 51, unknown 36.9
2725 Female, age 75, unknown 31.3
2823 Male, age 76, right hemisphere 29.5
2785 Male, age 18, unknown 25.6
Substantia nigra
nTPM: 37.1
2583 Male, age 75, right hemisphere 44.7
2665 Male, age 74, both hemispheres 42.0
2241 Male, age 72, unknown 41.1
2590 Female, age 75, unknown 39.5
1851 Male, age 51, unknown 37.6
1889 Female, age 72, unknown 37.3
1916 Female, age 42, unknown 34.9
2699 Male, age 18, unknown 33.7
2409 Female, age 72, unknown 30.3
1941 Male, age 53, unknown 29.6
Superior colliculus
nTPM: 38.8
2664 Male, age 75, both hemispheres 56.6
2668 Female, age 75, unknown 43.4
2261 Male, age 18, unknown 41.2
2587 Male, age 74, left hemisphere 41.1
1796 Male, age 53, unknown 38.4
1839 Male, age 51, unknown 37.7
2087 Female, age 72, unknown 35.5
1995 Male, age 72, unknown 34.6
1895 Male, age 76, right hemisphere 29.8
1913 Female, age 42, unknown 29.7
Ventral tegmental area
nTPM: 35.2
1942 Male, age 51, unknown 43.3
2021 Male, age 53, unknown 38.4
2223 Female, age 72, unknown 36.4
1915 Female, age 42, unknown 34.6
2410 Female, age 72, unknown 32.0
2218 Male, age 76, both hemispheres 26.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 25.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.7
Samples: 139

Max nTPM: 50.4
Min nTPM: 10.0
Std nTPM: 8.4
Median nTPM: 24.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 50.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 49.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 49.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 46.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 43.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 43.8
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 42.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 41.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 40.6
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 39.0
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 38.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 48.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.0
FF:10158-103A5 76 years, female 48.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 58.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 50.3
Samples: 4

Max nTPM: 58.8
Min nTPM: 44.8
Sample A Female 58.8
Sample B Female 44.8
Sample C Male 51.7
Sample D Male 45.8
Midbrain
nTPM: 58.2
Samples: 4

Max nTPM: 75.6
Min nTPM: 50.4
Sample A Female 55.2
Sample B Female 51.6
Sample C Male 75.6
Sample D Male 50.4
Periaqueductal gray
nTPM: 46.7
Samples: 3

Max nTPM: 50.7
Min nTPM: 40.8
Sample B Female 50.7
Sample C Male 48.7
Sample D Male 40.8
Superior colliculi
nTPM: 56.4
Samples: 4

Max nTPM: 71.1
Min nTPM: 44.5
Sample A Female 56.8
Sample B Female 44.5
Sample C Male 71.1
Sample D Male 53.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 43.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.6
Samples: 4

Max nTPM: 44.8
Min nTPM: 42.2
Sample A Male 42.6
Sample B Male 44.8
Sample C Female 44.7
Sample D Female 42.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
70805955 Antisense, RP_050725_02_E06, Mouse strain C57BL/6J (56 days, male) 1.1
68162264 Antisense, RP_041122_02_F10, Mouse strain C57BL/6J (56 days, male) 0.1

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