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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
30.2
nTPM
HPA Brain:
31.6
nTPM
GTEx:
30.2
nTPM
FANTOM5:
14.3
Scaled Tags Per Million
Pig:
47.6
nTPM
Mouse:
58.5
nTPM
Allen mouse:
0.0
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
31.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 28.1
2586
Male, age 75, left hemisphere
36.9
2019
Male, age 18, unknown
31.2
2666
Male, age 74, left hemisphere
31.0
1827
Male, age 72, unknown
29.5
2411
Female, age 72, unknown
28.0
1833
Male, age 53, unknown
26.8
1870
Female, age 42, unknown
25.6
2828
Female, age 72, unknown
25.4
2219
Male, age 76, both hemispheres
24.5
1830
Male, age 51, unknown
22.2
Dorsal raphe nucleus nTPM: 30.6
2047
Male, age 72, unknown
36.6
2298
Female, age 72, unknown
35.0
1828
Male, age 53, unknown
30.1
2016
Female, age 72, unknown
27.5
2750
Male, age 76, both hemispheres
23.6
Inferior colliculus nTPM: 31.6
2097
Female, age 72, unknown
35.2
1848
Female, age 42, unknown
31.7
2849
Male, age 72, unknown
30.0
1890
Male, age 53, unknown
29.6
Median raphe nucleus nTPM: 29.7
2220
Male, age 76, midline
29.7
Periaquaductal grey, anterior nTPM: 30.8
1795
Male, age 51, unknown
32.6
1947
Male, age 18, unknown
31.5
2502
Female, age 75, unknown
28.3
Periaquaductal grey, dorsal nTPM: 29.8
1840
Male, age 53, unknown
36.1
2850
Male, age 76, both hemispheres
28.2
2464
Female, age 72, unknown
27.8
1831
Male, age 72, unknown
26.9
Periaquaductal grey, lateral nTPM: 26.4
2272
Male, age 74, both hemispheres
27.0
2140
Male, age 76, both hemispheres
26.4
2053
Male, age 18, unknown
25.6
Pretectal area nTPM: 30.2
2007
Male, age 72, unknown
37.9
2224
Female, age 72, unknown
35.4
1944
Female, age 72, unknown
34.5
1817
Female, age 42, unknown
32.7
1816
Male, age 51, unknown
32.2
2407
Male, age 75, both hemispheres
29.9
2825
Male, age 18, unknown
28.8
2667
Female, age 75, unknown
28.5
1815
Male, age 53, unknown
25.8
2273
Male, age 74, both hemispheres
24.5
2316
Male, age 76, right hemisphere
22.0
Red nucleus nTPM: 22.8
1821
Female, age 72, unknown
25.8
2785
Male, age 18, unknown
25.4
2725
Female, age 75, unknown
25.3
2769
Male, age 72, unknown
24.7
2584
Male, age 75, left hemisphere
24.3
2227
Male, age 72, unknown
23.0
1954
Female, age 42, unknown
22.4
2823
Male, age 76, right hemisphere
21.8
2588
Male, age 74, left hemisphere
21.5
2503
Female, age 72, unknown
20.5
1904
Male, age 53, unknown
19.9
1865
Male, age 51, unknown
19.7
Substantia nigra nTPM: 30.8
1916
Female, age 42, unknown
37.8
2665
Male, age 74, both hemispheres
36.6
1889
Female, age 72, unknown
35.4
1851
Male, age 51, unknown
33.4
1941
Male, age 53, unknown
32.5
2699
Male, age 18, unknown
27.4
2241
Male, age 72, unknown
26.7
2409
Female, age 72, unknown
26.6
2590
Female, age 75, unknown
25.8
2583
Male, age 75, right hemisphere
25.6
Superior colliculus nTPM: 27.6
2664
Male, age 75, both hemispheres
36.2
2668
Female, age 75, unknown
32.7
1796
Male, age 53, unknown
31.1
2087
Female, age 72, unknown
29.4
1895
Male, age 76, right hemisphere
29.2
1839
Male, age 51, unknown
28.7
2587
Male, age 74, left hemisphere
25.9
2261
Male, age 18, unknown
24.9
1995
Male, age 72, unknown
19.9
1913
Female, age 42, unknown
17.7
Ventral tegmental area nTPM: 29.7
1915
Female, age 42, unknown
32.8
2410
Female, age 72, unknown
32.1
1942
Male, age 51, unknown
31.8
2218
Male, age 76, both hemispheres
31.0
2021
Male, age 53, unknown
28.7
2223
Female, age 72, unknown
22.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
30.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 30.2
Samples: 139
Max nTPM: 84.8
Min nTPM: 9.6
Std nTPM: 10.5
Median nTPM: 29.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
84.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
56.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
51.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
49.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
48.7
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
48.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
48.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
47.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
45.4
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
45.2
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
45.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
43.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
42.6
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
42.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
42.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
40.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
40.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
40.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
40.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
40.2
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
39.9
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
39.7
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
39.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
39.6
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
39.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
38.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
38.0
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
37.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
37.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
37.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
36.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
36.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
36.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
36.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
35.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
35.5
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
35.4
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
35.0
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
34.8
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
34.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
34.5
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
34.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
34.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
33.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
33.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
33.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
33.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
33.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
33.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
32.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
32.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
32.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
32.2
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
32.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
32.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
32.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
31.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
31.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
31.5
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
31.4
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
31.3
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
31.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
30.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
30.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
30.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
30.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
30.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
30.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
30.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
29.8
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
29.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
29.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
29.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
29.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
29.3
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
29.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
28.9
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
28.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
28.8
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
28.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
28.6
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
28.4
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
28.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
28.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
28.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
28.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
28.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
27.8
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
27.7
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
27.3
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
27.0
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
26.9
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
26.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
26.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
26.7
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
26.6
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
26.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
26.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
25.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
25.0
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
24.9
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
24.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
24.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
24.1
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
23.9
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
23.3
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
22.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
22.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
22.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
22.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
22.2
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
21.4
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
21.3
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
21.3
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
20.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
19.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
19.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
18.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
18.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
18.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
17.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
17.9
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
16.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
16.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
16.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
16.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
16.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
16.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
16.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
15.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
14.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
13.9
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
12.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
12.5
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
11.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
11.4
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
11.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
9.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
9.6
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
58.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 58.5
Samples: 4
Max nTPM: 62.6
Min nTPM: 51.2
Sample A
Male
62.6
Sample B
Male
61.7
Sample C
Female
51.2
Sample D
Female
58.3
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.