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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1844.8 nTPM
GTEx:1844.8 nTPM
FANTOM5:1895.8 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA050459
Squamous epithelial cells Medium

VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1844.8
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1844.8
Samples: 170

Max nTPM: 4808.2
Min nTPM: 860.4
Std nTPM: 607.5
Median nTPM: 1744.1
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 4808.2
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 4397.4
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 3538.7
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 3213.9
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 3098.0
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 3052.1
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 3016.9
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 2992.1
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 2918.4
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 2870.5
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 2855.6
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 2843.5
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 2842.6
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 2758.6
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 2640.1
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 2620.9
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 2610.3
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 2607.6
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 2595.3
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 2575.9
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 2570.5
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 2557.2
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 2492.0
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 2469.1
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 2315.1
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 2302.4
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 2296.4
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 2292.5
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 2290.5
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 2284.9
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 2279.5
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 2278.9
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 2250.5
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 2232.3
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 2212.9
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 2197.0
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 2193.4
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 2188.6
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 2188.4
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 2174.7
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 2166.9
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 2166.7
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 2143.0
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 2127.3
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 2126.6
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 2115.6
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 2099.6
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 2077.4
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 2069.7
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 2060.4
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 2059.6
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 2058.3
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 2057.8
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 2055.9
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 2047.4
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 2045.4
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 2042.0
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 2036.4
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 2033.3
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 2028.6
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 2012.6
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1998.0
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1998.0
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1983.6
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1958.7
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 1948.0
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1926.4
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1884.4
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1872.4
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1857.2
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1839.8
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1833.0
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1827.3
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 1825.4
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1806.1
GTEX-16NPV-2526-SM-6M483 50-59 years, female 1804.8
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1804.5
GTEX-11I78-2026-SM-5987C 50-59 years, female 1801.6
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1796.0
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 1778.1
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1764.2
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1764.0
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1755.0
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 1748.6
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 1745.3
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1742.9
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1742.3
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1740.8
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 1740.3
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1738.7
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1736.8
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 1715.1
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1699.7
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1698.6
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1696.8
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1691.8
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1686.8
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1679.5
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1663.3
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 1658.5
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1637.3
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 1635.9
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1630.4
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1617.9
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1595.2
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1593.0
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1591.0
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 1585.1
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1541.7
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 1525.5
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1519.8
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1515.1
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1514.8
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 1514.4
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1508.8
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1498.1
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1484.9
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 1474.3
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1469.6
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1465.9
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1457.9
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1457.0
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1446.7
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1445.4
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1440.1
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1436.6
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1425.7
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1425.6
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1405.4
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1402.4
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1397.9
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1397.3
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1391.3
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1391.1
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1365.3
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1363.8
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1343.2
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1342.5
GTEX-1C475-0526-SM-793AC 40-49 years, female 1340.4
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1327.3
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1321.0
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1319.0
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1309.4
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1309.0
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1295.6
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 1290.8
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1283.3
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1282.0
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1244.5
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1242.6
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1214.3
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1205.1
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1195.3
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1172.6
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1166.6
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1142.5
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1137.8
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1118.3
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1085.0
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1083.8
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1068.8
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1037.1
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1033.5
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1003.3
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1002.5
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 992.3
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 972.6
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 900.1
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 893.1
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 860.4
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1895.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 1895.8
FF:10204-103F6 68 years, female 1895.8

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