MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.6 nTPM
HPA Brain:73.2 nTPM
GTEx:34.6 nTPM
FANTOM5:52.0 Scaled Tags Per Million
Pig:83.8 nTPM
Mouse:84.1 nTPM
Allen mouse:6.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 73.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.5
1827 Male, age 72, unknown 67.4
2411 Female, age 72, unknown 63.5
2666 Male, age 74, left hemisphere 60.3
1870 Female, age 42, unknown 57.9
1833 Male, age 53, unknown 56.6
2586 Male, age 75, left hemisphere 54.8
1830 Male, age 51, unknown 53.6
2019 Male, age 18, unknown 52.0
2828 Female, age 72, unknown 50.7
2219 Male, age 76, both hemispheres 48.0
Dorsal raphe nucleus
nTPM: 57.1
2298 Female, age 72, unknown 64.9
2016 Female, age 72, unknown 57.9
1828 Male, age 53, unknown 56.0
2047 Male, age 72, unknown 54.9
2750 Male, age 76, both hemispheres 51.8
Inferior colliculus
nTPM: 64.6
1848 Female, age 42, unknown 68.5
2097 Female, age 72, unknown 68.0
2849 Male, age 72, unknown 65.1
1890 Male, age 53, unknown 56.7
Median raphe nucleus
nTPM: 55.0
2220 Male, age 76, midline 55.0
Periaquaductal grey, anterior
nTPM: 73.2
1947 Male, age 18, unknown 83.0
2502 Female, age 75, unknown 73.2
1795 Male, age 51, unknown 63.5
Periaquaductal grey, dorsal
nTPM: 63.4
1840 Male, age 53, unknown 74.3
2464 Female, age 72, unknown 63.0
2850 Male, age 76, both hemispheres 58.5
1831 Male, age 72, unknown 57.8
Periaquaductal grey, lateral
nTPM: 59.2
2053 Male, age 18, unknown 61.7
2272 Male, age 74, both hemispheres 58.2
2140 Male, age 76, both hemispheres 57.6
Pretectal area
nTPM: 64.7
1816 Male, age 51, unknown 74.7
1944 Female, age 72, unknown 70.2
2273 Male, age 74, both hemispheres 69.9
2007 Male, age 72, unknown 69.1
2224 Female, age 72, unknown 66.0
1817 Female, age 42, unknown 65.9
2825 Male, age 18, unknown 64.9
1815 Male, age 53, unknown 63.0
2407 Male, age 75, both hemispheres 57.9
2316 Male, age 76, right hemisphere 55.3
2667 Female, age 75, unknown 55.1
Red nucleus
nTPM: 49.2
1821 Female, age 72, unknown 54.9
2588 Male, age 74, left hemisphere 54.3
2584 Male, age 75, left hemisphere 53.4
2785 Male, age 18, unknown 52.1
2725 Female, age 75, unknown 51.4
2503 Female, age 72, unknown 50.5
1954 Female, age 42, unknown 48.6
2227 Male, age 72, unknown 47.9
2769 Male, age 72, unknown 47.4
1904 Male, age 53, unknown 45.1
1865 Male, age 51, unknown 44.2
2823 Male, age 76, right hemisphere 41.0
Substantia nigra
nTPM: 57.2
2241 Male, age 72, unknown 64.1
1941 Male, age 53, unknown 62.7
2590 Female, age 75, unknown 62.4
1889 Female, age 72, unknown 62.0
1916 Female, age 42, unknown 57.0
2583 Male, age 75, right hemisphere 56.4
2409 Female, age 72, unknown 55.1
1851 Male, age 51, unknown 54.9
2665 Male, age 74, both hemispheres 54.3
2699 Male, age 18, unknown 43.0
Superior colliculus
nTPM: 60.8
2261 Male, age 18, unknown 67.8
1839 Male, age 51, unknown 67.0
2664 Male, age 75, both hemispheres 66.8
1895 Male, age 76, right hemisphere 62.3
1796 Male, age 53, unknown 62.2
2087 Female, age 72, unknown 61.9
2668 Female, age 75, unknown 61.2
2587 Male, age 74, left hemisphere 59.5
1913 Female, age 42, unknown 50.0
1995 Male, age 72, unknown 49.5
Ventral tegmental area
nTPM: 54.9
1942 Male, age 51, unknown 59.0
2410 Female, age 72, unknown 58.5
1915 Female, age 42, unknown 54.6
2223 Female, age 72, unknown 53.3
2021 Male, age 53, unknown 52.4
2218 Male, age 76, both hemispheres 51.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 34.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.6
Samples: 139

Max nTPM: 59.2
Min nTPM: 22.4
Std nTPM: 5.9
Median nTPM: 33.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 59.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 54.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 48.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 46.9
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 46.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 46.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 46.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 45.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 45.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 44.7
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 44.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 52.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.0
FF:10158-103A5 76 years, female 52.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 83.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 59.5
Samples: 4

Max nTPM: 75.8
Min nTPM: 41.3
Sample A Female 75.8
Sample B Female 55.5
Sample C Male 65.3
Sample D Male 41.3
Midbrain
nTPM: 79.9
Samples: 4

Max nTPM: 102.8
Min nTPM: 58.7
Sample A Female 58.7
Sample B Female 64.6
Sample C Male 102.8
Sample D Male 93.4
Periaqueductal gray
nTPM: 63.0
Samples: 3

Max nTPM: 72.2
Min nTPM: 58.2
Sample B Female 58.2
Sample C Male 72.2
Sample D Male 58.6
Superior colliculi
nTPM: 83.8
Samples: 4

Max nTPM: 99.0
Min nTPM: 58.9
Sample A Female 91.8
Sample B Female 58.9
Sample C Male 99.0
Sample D Male 85.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 84.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 84.2
Samples: 4

Max nTPM: 90.3
Min nTPM: 76.5
Sample A Male 76.5
Sample B Male 90.3
Sample C Female 88.0
Sample D Female 81.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.4
70429453 Antisense, RP_050614_01_F11, Mouse strain C57BL/6J (56 days, male) 6.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org