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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
42.0
nTPM
Monaco:
103.5
nTPM
Schmiedel:
39.4
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.0
HPA sample
nTPM
gdT-cell nTPM: 30.5
Samples: 6
Max nTPM: 35.6
Min nTPM: 21.2
P10809_1007
21.2
P10809_1022
35.5
P10809_1041
35.6
P10809_1060
30.1
P10809_1077
26.5
P10809_1098
34.2
MAIT T-cell nTPM: 29.0
Samples: 6
Max nTPM: 34.6
Min nTPM: 19.4
P10809_1006
19.4
P10809_1024
31.6
P10809_1043
34.6
P10809_1062
30.2
P10809_1083
31.8
P10809_1097
26.3
Memory CD4 T-cell nTPM: 27.6
Samples: 6
Max nTPM: 35.9
Min nTPM: 21.5
P10809_1014
21.5
P10809_1026
35.9
P10809_1045
26.1
P10809_1064
26.0
P10809_1086
30.7
P10809_1113
25.6
Memory CD8 T-cell nTPM: 29.6
Samples: 5
Max nTPM: 34.2
Min nTPM: 25.3
P10809_1012
26.3
P10809_1027
29.0
P10809_1046
34.2
P10809_1065
25.3
P10809_1111
33.1
Naive CD4 T-cell nTPM: 23.9
Samples: 6
Max nTPM: 29.6
Min nTPM: 17.6
P10809_1015
17.6
P10809_1030
24.5
P10809_1049
29.6
P10809_1068
23.2
P10809_1085
25.0
P10809_1112
23.7
Naive CD8 T-cell nTPM: 27.0
Samples: 6
Max nTPM: 33.6
Min nTPM: 21.3
P10809_1016
21.3
P10809_1031
26.2
P10809_1050
22.7
P10809_1069
33.6
P10809_1087
32.4
P10809_1110
25.9
T-reg nTPM: 42.0
Samples: 6
Max nTPM: 64.0
Min nTPM: 22.2
P10809_1018
36.6
P10809_1037
57.1
P10809_1056
42.3
P10809_1075
29.7
P10809_1094
22.2
P10809_1106
64.0
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
103.5
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 93.9
Samples: 4
Max nTPM: 127.1
Min nTPM: 63.6
RHH5202_R3573
127.1
RHH5230_R3602
93.5
RHH5259_R3631
63.6
RHH5288_R3660
91.3
Effector memory CD8 T-cell nTPM: 102.3
Samples: 4
Max nTPM: 147.3
Min nTPM: 78.0
RHH5203_R3574
147.3
RHH5231_R3603
82.9
RHH5260_R3632
78.0
RHH5289_R3661
101.1
MAIT T-cell nTPM: 99.8
Samples: 4
Max nTPM: 123.3
Min nTPM: 75.5
RHH5233_R3605
107.1
RHH5205_R3576
123.3
RHH5262_R3634
93.1
RHH5297_R3663
75.5
Memory CD4 T-cell TFH nTPM: 77.0
Samples: 4
Max nTPM: 100.3
Min nTPM: 61.1
RHH5300_R3666
69.8
RHH5236_R3608
61.1
RHH5265_R3637
76.7
RHH5208_R3579
100.3
Memory CD4 T-cell Th1 nTPM: 73.4
Samples: 4
Max nTPM: 77.8
Min nTPM: 65.9
RHH5210_R3581
72.8
RHH5302_R3668
77.0
RHH5238_R3610
77.8
RHH5267_R3639
65.9
Memory CD4 T-cell Th1/Th17 nTPM: 81.0
Samples: 4
Max nTPM: 127.2
Min nTPM: 53.8
RHH5303_R3669
77.2
RHH5211_R3582
127.2
RHH5239_R3611
53.8
RHH5268_R3640
65.8
Memory CD4 T-cell Th17 nTPM: 70.2
Samples: 4
Max nTPM: 74.9
Min nTPM: 60.5
RHH5304_R3670
74.7
RHH5212_R3583
74.9
RHH5240_R3612
60.5
RHH5269_R3641
70.6
Memory CD4 T-cell Th2 nTPM: 86.3
Samples: 4
Max nTPM: 100.9
Min nTPM: 74.5
RHH5305_R3671
79.9
RHH5213_R3584
100.9
RHH5241_R3613
89.8
RHH5270_R3642
74.5
Naive CD4 T-cell nTPM: 78.8
Samples: 4
Max nTPM: 90.3
Min nTPM: 71.6
RHH5306_R3672
72.2
RHH5214_R3585
90.3
RHH5242_R3614
81.1
RHH5271_R3643
71.6
Naive CD8 T-cell nTPM: 78.6
Samples: 4
Max nTPM: 92.8
Min nTPM: 58.3
RHH5201_R3572
92.8
RHH5229_R3601
58.3
RHH5258_R3630
82.9
RHH5287_R3659
80.2
Non-Vd2 gdTCR nTPM: 88.9
Samples: 4
Max nTPM: 111.0
Min nTPM: 75.5
RHH5235_R3607
78.9
RHH5264_R3636
90.2
RHH5207_R3578
111.0
RHH5299_R3665
75.5
T-reg nTPM: 81.6
Samples: 4
Max nTPM: 95.3
Min nTPM: 74.0
RHH5301_R3667
74.6
RHH5237_R3609
82.5
RHH5266_R3638
74.0
RHH5209_R3580
95.3
Terminal effector memory CD4 T-cell nTPM: 75.2
Samples: 2
Max nTPM: 95.4
Min nTPM: 54.9
RHH5243_R3615
95.4
RHH5272_R3644
54.9
Terminal effector memory CD8 T-cell nTPM: 103.5
Samples: 4
Max nTPM: 107.1
Min nTPM: 96.0
RHH5232_R3604
107.1
RHH5204_R3575
107.0
RHH5261_R3633
96.0
RHH5296_R3662
104.0
Vd2 gdTCR nTPM: 91.0
Samples: 4
Max nTPM: 99.2
Min nTPM: 76.8
RHH5234_R3606
95.9
RHH5206_R3577
99.2
RHH5263_R3635
92.1
RHH5298_R3664
76.8
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
