BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:106.7 nTPM
HPA Brain:48.9 nTPM
GTEx:106.7 nTPM
FANTOM5:12.3 Scaled Tags Per Million
Pig:92.6 nTPM
Mouse:161.7 nTPM
Allen mouse:1.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 48.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 38.6
2481 Female, age 94, left hemisphere 56.3
2290 Female, age 72, unknown 49.2
2289 Male, age 61, right hemisphere 45.8
1854 Male, age 80, left hemisphere 37.2
1857 Female, age 85, left hemisphere 35.0
2288 Male, age 75, left hemisphere 30.4
1781 Male, age 74, unknown 29.4
2846 Female, age 79, unknown 25.2
Globus pallidus, externus
nTPM: 48.9
1996 Male, age 80, right hemisphere 77.5
2646 Male, age 61, right hemisphere 56.8
2772 Female, age 79, unknown 50.9
2567 Female, age 72, unknown 31.1
2395 Male, age 75, both hemispheres 28.1
Globus pallidus, internus
nTPM: 42.8
2037 Male, age 80, right hemisphere 56.5
1818 Male, age 74, unknown 49.5
2483 Female, age 94, right hemisphere 48.0
2778 Female, age 91, both hemispheres 43.7
2287 Male, age 75, right hemisphere 40.2
2111 Female, age 85, right hemisphere 32.4
2566 Female, age 72, unknown 29.6
Nucleus accumbens
nTPM: 30.5
2732 Male, age 80, right hemisphere 53.4
1806 Female, age 85, left hemisphere 35.2
2698 Female, age 72, unknown 31.5
2286 Male, age 75, left hemisphere 30.6
2391 Female, age 94, left hemisphere 26.8
1783 Male, age 74, unknown 23.5
1856 Female, age 91, right hemisphere 22.4
2824 Male, age 61, right hemisphere 20.7
Nucleus basalis of Meynert
nTPM: 38.8
2569 Male, age 61, both hemispheres 60.0
2821 Male, age 75, both hemispheres 38.9
2484 Female, age 94, left hemisphere 28.5
2393 Male, age 80, right hemisphere 27.8
Nucleus of the diagonal band
nTPM: 28.0
1979 Male, age 74, unknown 54.4
1812 Female, age 91, both hemispheres 35.6
2775 Male, age 80, right hemisphere 18.7
2029 Male, age 61, right hemisphere 16.3
2195 Female, age 85, both hemispheres 14.9
Putamen
nTPM: 26.0
2482 Female, age 94, left hemisphere 33.2
2647 Male, age 75, left hemisphere 30.3
2489 Female, age 72, unknown 28.5
1937 Female, age 91, right hemisphere 24.4
1838 Male, age 80, right hemisphere 23.1
2466 Female, age 79, unknown 22.3
1829 Male, age 74, unknown 20.0
Septal nuclei
nTPM: 35.3
2199 Male, age 80, right hemisphere 70.3
2009 Female, age 91, both hemispheres 41.0
2629 Female, age 94, right hemisphere 40.3
2059 Female, age 85, both hemispheres 35.5
2394 Male, age 61, left hemisphere 29.2
2031 Female, age 72, unknown 16.9
1960 Male, age 74, unknown 14.3
Stria terminalis, bed nucleus
nTPM: 25.7
2201 Male, age 74, unknown 28.4
1974 Female, age 91, both hemispheres 26.8
2486 Female, age 94, both hemispheres 21.8

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 106.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 106.7
Samples: 300

Max nTPM: 311.9
Min nTPM: 19.9
Std nTPM: 51.9
Median nTPM: 95.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 311.9
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 295.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 294.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 289.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 268.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 262.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 254.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 247.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 247.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 244.4
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 223.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 71.0
Samples: 285

Max nTPM: 330.8
Min nTPM: 18.6
Std nTPM: 40.3
Median nTPM: 60.5
GTEX-1NV5F-0011-R6a-SM-G8LKG 60-69 years, female 330.8
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 296.6
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 216.1
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 200.7
GTEX-1MCQQ-0011-R6b-SM-F3425 60-69 years, male 184.6
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 181.5
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 161.9
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 161.2
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 154.3
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 154.0
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 152.1
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Brain - Putamen (basal ganglia)
Average nTPM: 87.1
Samples: 254

Max nTPM: 318.3
Min nTPM: 22.9
Std nTPM: 44.7
Median nTPM: 78.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 318.3
GTEX-1IGQW-0011-R7a-SM-GPRXV 60-69 years, male 284.2
GTEX-1O9I2-0011-R7a-SM-F2TAI 50-59 years, male 260.5
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 211.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 208.5
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 204.1
GTEX-1NV8Z-0011-R7a-SM-F3K4J 60-69 years, male 200.2
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 193.1
GTEX-11ZTS-0011-R7a-SM-GI4XD 60-69 years, female 192.7
GTEX-16XZZ-0011-R7b-SM-7MGVT 60-69 years, male 183.6
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 178.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 12.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 12.3
FF:10164-103B2 76 years, female 12.3
Nucleus accumbens
Scaled Tags Per Million: 7.9
FF:10037-101F1 23-56 years, mixed 7.9
Putamen
Scaled Tags Per Million: 7.3
FF:10176-103C5 60 years, female 7.3
Globus pallidus
Scaled Tags Per Million: 10.8
FF:10161-103A8 76 years, female 14.7
FF:10175-103C4 60 years, female 7.0

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 92.6
Pig sample Sample description nTPM
Caudate
nTPM: 92.6
Samples: 4

Max nTPM: 117.3
Min nTPM: 78.3
Sample A Female 78.3
Sample B Female 82.6
Sample C Male 117.3
Sample D Male 92.1
Putamen
nTPM: 67.4
Samples: 4

Max nTPM: 82.2
Min nTPM: 42.6
Sample A Female 82.2
Sample B Female 42.6
Sample C Male 71.6
Sample D Male 73.1
Septum
nTPM: 65.7
Samples: 4

Max nTPM: 74.4
Min nTPM: 59.0
Sample A Female 60.3
Sample B Female 69.2
Sample C Male 74.4
Sample D Male 59.0
Ventral pallidum
nTPM: 61.7
Samples: 4

Max nTPM: 81.0
Min nTPM: 43.3
Sample A Female 43.3
Sample B Female 81.0
Sample C Male 63.2
Sample D Male 59.3

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 161.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 53.7
Samples: 4

Max nTPM: 59.7
Min nTPM: 49.1
Sample A Male 59.7
Sample B Male 51.2
Sample C Female 49.1
Sample D Female 54.8
Septum
nTPM: 161.6
Samples: 4

Max nTPM: 185.6
Min nTPM: 98.1
Sample A Male 98.1
Sample B Male 180.1
Sample C Female 182.7
Sample D Female 185.6
Ventral forebrain
nTPM: 19.2
Samples: 4

Max nTPM: 21.6
Min nTPM: 14.1
Sample A Male 14.1
Sample B Male 21.6
Sample C Female 20.6
Sample D Female 20.4

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 1.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.5
75077281 Antisense, RP_060412_02_E12, Mouse strain C57BL/6J (56 days, male) 2.1
68920749 Antisense, RP_050303_01_B06, Mouse strain C57BL/6J (56 days, male) 1.0
Pallidum
Expression energy: 1.1
75077281 Antisense, RP_060412_02_E12, Mouse strain C57BL/6J (56 days, male) 1.6
68920749 Antisense, RP_050303_01_B06, Mouse strain C57BL/6J (56 days, male) 0.7

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