MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:76.1 nTPM
HPA Brain:106.9 nTPM
GTEx:76.1 nTPM
FANTOM5:271.3 Scaled Tags Per Million
Pig:162.5 nTPM
Mouse:94.2 nTPM
Allen mouse:0.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 106.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 69.3
2219 Male, age 76, both hemispheres 90.0
1870 Female, age 42, unknown 86.4
2828 Female, age 72, unknown 78.0
1833 Male, age 53, unknown 77.6
1827 Male, age 72, unknown 73.8
1830 Male, age 51, unknown 62.9
2019 Male, age 18, unknown 61.2
2411 Female, age 72, unknown 59.9
2586 Male, age 75, left hemisphere 57.2
2666 Male, age 74, left hemisphere 46.2
Dorsal raphe nucleus
nTPM: 94.3
2016 Female, age 72, unknown 109.1
1828 Male, age 53, unknown 98.1
2298 Female, age 72, unknown 97.3
2750 Male, age 76, both hemispheres 84.2
2047 Male, age 72, unknown 82.9
Inferior colliculus
nTPM: 103.1
2097 Female, age 72, unknown 112.7
1848 Female, age 42, unknown 111.2
1890 Male, age 53, unknown 98.4
2849 Male, age 72, unknown 90.0
Median raphe nucleus
nTPM: 78.6
2220 Male, age 76, midline 78.6
Periaquaductal grey, anterior
nTPM: 83.2
2502 Female, age 75, unknown 90.8
1947 Male, age 18, unknown 80.4
1795 Male, age 51, unknown 78.5
Periaquaductal grey, dorsal
nTPM: 106.9
2850 Male, age 76, both hemispheres 130.2
1840 Male, age 53, unknown 117.0
2464 Female, age 72, unknown 98.7
1831 Male, age 72, unknown 81.8
Periaquaductal grey, lateral
nTPM: 101.3
2140 Male, age 76, both hemispheres 120.5
2272 Male, age 74, both hemispheres 91.8
2053 Male, age 18, unknown 91.5
Pretectal area
nTPM: 94.6
2273 Male, age 74, both hemispheres 138.0
2224 Female, age 72, unknown 114.5
2667 Female, age 75, unknown 101.2
1944 Female, age 72, unknown 100.1
1817 Female, age 42, unknown 98.4
2316 Male, age 76, right hemisphere 97.4
1815 Male, age 53, unknown 89.7
1816 Male, age 51, unknown 87.9
2825 Male, age 18, unknown 84.7
2007 Male, age 72, unknown 66.0
2407 Male, age 75, both hemispheres 62.4
Red nucleus
nTPM: 81.2
1821 Female, age 72, unknown 106.7
2503 Female, age 72, unknown 102.7
1954 Female, age 42, unknown 96.7
2227 Male, age 72, unknown 94.7
2769 Male, age 72, unknown 93.3
2823 Male, age 76, right hemisphere 92.5
1904 Male, age 53, unknown 88.7
1865 Male, age 51, unknown 88.1
2725 Female, age 75, unknown 66.3
2785 Male, age 18, unknown 62.5
2584 Male, age 75, left hemisphere 42.2
2588 Male, age 74, left hemisphere 40.4
Substantia nigra
nTPM: 96.6
2699 Male, age 18, unknown 161.5
2241 Male, age 72, unknown 113.2
1916 Female, age 42, unknown 110.7
2409 Female, age 72, unknown 105.3
1851 Male, age 51, unknown 102.3
1889 Female, age 72, unknown 96.6
2665 Male, age 74, both hemispheres 79.9
1941 Male, age 53, unknown 72.6
2590 Female, age 75, unknown 63.0
2583 Male, age 75, right hemisphere 60.7
Superior colliculus
nTPM: 86.7
2668 Female, age 75, unknown 122.1
1995 Male, age 72, unknown 102.0
2087 Female, age 72, unknown 97.0
1913 Female, age 42, unknown 92.9
1895 Male, age 76, right hemisphere 83.9
2261 Male, age 18, unknown 83.1
1796 Male, age 53, unknown 80.8
1839 Male, age 51, unknown 79.5
2587 Male, age 74, left hemisphere 74.3
2664 Male, age 75, both hemispheres 51.6
Ventral tegmental area
nTPM: 81.8
1915 Female, age 42, unknown 91.5
1942 Male, age 51, unknown 83.8
2223 Female, age 72, unknown 80.1
2410 Female, age 72, unknown 79.3
2218 Male, age 76, both hemispheres 78.3
2021 Male, age 53, unknown 77.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 76.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 76.1
Samples: 183

Max nTPM: 184.5
Min nTPM: 8.6
Std nTPM: 32.5
Median nTPM: 73.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 184.5
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 176.1
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 173.6
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 172.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 157.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 157.1
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 145.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 136.8
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 133.8
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 133.7
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 132.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 271.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 271.3
FF:10158-103A5 76 years, female 271.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 162.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 145.1
Samples: 4

Max nTPM: 161.5
Min nTPM: 124.9
Sample A Female 145.2
Sample B Female 124.9
Sample C Male 148.7
Sample D Male 161.5
Midbrain
nTPM: 157.4
Samples: 4

Max nTPM: 180.2
Min nTPM: 115.6
Sample A Female 180.2
Sample B Female 167.0
Sample C Male 166.8
Sample D Male 115.6
Periaqueductal gray
nTPM: 162.5
Samples: 3

Max nTPM: 183.8
Min nTPM: 143.7
Sample B Female 183.8
Sample C Male 160.1
Sample D Male 143.7
Superior colliculi
nTPM: 109.1
Samples: 4

Max nTPM: 140.0
Min nTPM: 62.6
Sample A Female 112.7
Sample B Female 62.6
Sample C Male 140.0
Sample D Male 121.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 94.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 94.2
Samples: 4

Max nTPM: 98.7
Min nTPM: 86.8
Sample A Male 86.8
Sample B Male 98.7
Sample C Female 96.6
Sample D Female 94.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
77371825 Antisense, RP_070116_02_E06, Mouse strain C57BL/6J (56 days, male) 1.1
71487157 Antisense, RP_050913_01_D03, Mouse strain C57BL/6J (56 days, male) 0.6

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