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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.1
nTPM
Monaco:
22.4
nTPM
Schmiedel:
190.5
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.1
HPA sample
nTPM
gdT-cell nTPM: 1.8
Samples: 6
Max nTPM: 2.2
Min nTPM: 1.4
P10809_1007
1.4
P10809_1022
1.6
P10809_1041
2.2
P10809_1060
2.1
P10809_1077
1.9
P10809_1098
1.8
MAIT T-cell nTPM: 2.4
Samples: 6
Max nTPM: 3.5
Min nTPM: 1.4
P10809_1006
2.8
P10809_1024
1.8
P10809_1043
1.4
P10809_1062
2.8
P10809_1083
3.5
P10809_1097
1.9
Memory CD4 T-cell nTPM: 2.2
Samples: 6
Max nTPM: 3.7
Min nTPM: 1.3
P10809_1014
1.8
P10809_1026
3.7
P10809_1045
1.3
P10809_1064
1.5
P10809_1086
2.4
P10809_1113
2.7
Memory CD8 T-cell nTPM: 2.7
Samples: 5
Max nTPM: 3.8
Min nTPM: 1.8
P10809_1012
3.1
P10809_1027
2.6
P10809_1046
1.8
P10809_1065
2.4
P10809_1111
3.8
Naive CD4 T-cell nTPM: 2.8
Samples: 6
Max nTPM: 6.0
Min nTPM: 0.6
P10809_1015
3.4
P10809_1030
0.6
P10809_1049
1.9
P10809_1068
6.0
P10809_1085
3.1
P10809_1112
2.0
Naive CD8 T-cell nTPM: 2.2
Samples: 6
Max nTPM: 3.3
Min nTPM: 1.1
P10809_1016
3.3
P10809_1031
3.1
P10809_1050
1.1
P10809_1069
1.3
P10809_1087
1.5
P10809_1110
2.8
T-reg nTPM: 7.1
Samples: 6
Max nTPM: 8.8
Min nTPM: 4.7
P10809_1018
8.0
P10809_1037
8.5
P10809_1056
4.7
P10809_1075
8.8
P10809_1094
6.1
P10809_1106
6.5
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.4
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 18.6
Samples: 4
Max nTPM: 19.8
Min nTPM: 17.6
RHH5202_R3573
18.1
RHH5230_R3602
17.6
RHH5259_R3631
19.8
RHH5288_R3660
18.9
Effector memory CD8 T-cell nTPM: 22.4
Samples: 4
Max nTPM: 33.2
Min nTPM: 13.2
RHH5203_R3574
33.2
RHH5231_R3603
13.2
RHH5260_R3632
22.1
RHH5289_R3661
21.1
MAIT T-cell nTPM: 15.5
Samples: 4
Max nTPM: 37.5
Min nTPM: 6.2
RHH5233_R3605
8.8
RHH5205_R3576
37.5
RHH5262_R3634
9.6
RHH5297_R3663
6.2
Memory CD4 T-cell TFH nTPM: 12.6
Samples: 4
Max nTPM: 18.8
Min nTPM: 8.0
RHH5300_R3666
8.0
RHH5236_R3608
18.8
RHH5265_R3637
12.8
RHH5208_R3579
10.8
Memory CD4 T-cell Th1 nTPM: 16.9
Samples: 4
Max nTPM: 22.5
Min nTPM: 14.5
RHH5210_R3581
22.5
RHH5302_R3668
15.4
RHH5238_R3610
14.5
RHH5267_R3639
15.0
Memory CD4 T-cell Th1/Th17 nTPM: 11.4
Samples: 4
Max nTPM: 23.5
Min nTPM: 5.2
RHH5303_R3669
5.2
RHH5211_R3582
8.4
RHH5239_R3611
23.5
RHH5268_R3640
8.3
Memory CD4 T-cell Th17 nTPM: 14.2
Samples: 4
Max nTPM: 23.4
Min nTPM: 7.0
RHH5304_R3670
7.0
RHH5212_R3583
12.9
RHH5240_R3612
23.4
RHH5269_R3641
13.5
Memory CD4 T-cell Th2 nTPM: 21.9
Samples: 4
Max nTPM: 32.7
Min nTPM: 14.5
RHH5305_R3671
16.0
RHH5213_R3584
32.7
RHH5241_R3613
14.5
RHH5270_R3642
24.4
Naive CD4 T-cell nTPM: 13.8
Samples: 4
Max nTPM: 17.7
Min nTPM: 8.3
RHH5306_R3672
17.7
RHH5214_R3585
14.0
RHH5242_R3614
15.2
RHH5271_R3643
8.3
Naive CD8 T-cell nTPM: 14.9
Samples: 4
Max nTPM: 24.8
Min nTPM: 5.3
RHH5201_R3572
24.8
RHH5229_R3601
11.2
RHH5258_R3630
5.3
RHH5287_R3659
18.1
Non-Vd2 gdTCR nTPM: 8.6
Samples: 4
Max nTPM: 17.3
Min nTPM: 2.5
RHH5235_R3607
5.7
RHH5264_R3636
2.5
RHH5207_R3578
17.3
RHH5299_R3665
9.0
T-reg nTPM: 18.2
Samples: 4
Max nTPM: 22.9
Min nTPM: 15.5
RHH5301_R3667
15.7
RHH5237_R3609
18.8
RHH5266_R3638
15.5
RHH5209_R3580
22.9
Terminal effector memory CD4 T-cell nTPM: 5.5
Samples: 2
Max nTPM: 5.6
Min nTPM: 5.4
RHH5243_R3615
5.6
RHH5272_R3644
5.4
Terminal effector memory CD8 T-cell nTPM: 13.2
Samples: 4
Max nTPM: 14.9
Min nTPM: 11.2
RHH5232_R3604
12.8
RHH5204_R3575
11.2
RHH5261_R3633
13.9
RHH5296_R3662
14.9
Vd2 gdTCR nTPM: 10.6
Samples: 4
Max nTPM: 14.0
Min nTPM: 7.9
RHH5234_R3606
7.9
RHH5206_R3577
11.9
RHH5263_R3635
14.0
RHH5298_R3664
8.4
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
