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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
34.3
nTPM
HPA Brain:
58.6
nTPM
GTEx:
34.3
nTPM
FANTOM5:
67.3
Scaled Tags Per Million
Pig:
17.5
nTPM
Mouse:
16.5
nTPM
Allen mouse:
0.3
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
58.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 50.0
1870
Female, age 42, unknown
72.0
2019
Male, age 18, unknown
69.8
2411
Female, age 72, unknown
69.8
1830
Male, age 51, unknown
55.1
1833
Male, age 53, unknown
52.1
2828
Female, age 72, unknown
47.8
2586
Male, age 75, left hemisphere
38.8
1827
Male, age 72, unknown
34.9
2666
Male, age 74, left hemisphere
30.1
2219
Male, age 76, both hemispheres
29.4
Dorsal raphe nucleus nTPM: 45.3
2750
Male, age 76, both hemispheres
73.5
2016
Female, age 72, unknown
45.1
1828
Male, age 53, unknown
39.2
2298
Female, age 72, unknown
37.9
2047
Male, age 72, unknown
30.7
Inferior colliculus nTPM: 33.3
1890
Male, age 53, unknown
37.0
1848
Female, age 42, unknown
35.4
2097
Female, age 72, unknown
32.5
2849
Male, age 72, unknown
28.2
Median raphe nucleus nTPM: 39.3
2220
Male, age 76, midline
39.3
Periaquaductal grey, anterior nTPM: 35.6
2502
Female, age 75, unknown
42.0
1795
Male, age 51, unknown
36.2
1947
Male, age 18, unknown
28.6
Periaquaductal grey, dorsal nTPM: 34.7
2850
Male, age 76, both hemispheres
40.6
2464
Female, age 72, unknown
38.3
1831
Male, age 72, unknown
35.2
1840
Male, age 53, unknown
24.5
Periaquaductal grey, lateral nTPM: 41.7
2272
Male, age 74, both hemispheres
45.2
2140
Male, age 76, both hemispheres
41.6
2053
Male, age 18, unknown
38.1
Pretectal area nTPM: 36.5
2273
Male, age 74, both hemispheres
48.1
2316
Male, age 76, right hemisphere
47.5
2667
Female, age 75, unknown
42.1
1815
Male, age 53, unknown
40.3
2224
Female, age 72, unknown
37.1
2825
Male, age 18, unknown
36.5
2407
Male, age 75, both hemispheres
35.0
2007
Male, age 72, unknown
34.5
1817
Female, age 42, unknown
31.8
1944
Female, age 72, unknown
26.0
1816
Male, age 51, unknown
23.1
Red nucleus nTPM: 58.6
2227
Male, age 72, unknown
76.0
2769
Male, age 72, unknown
72.8
1865
Male, age 51, unknown
72.1
2785
Male, age 18, unknown
70.1
1904
Male, age 53, unknown
61.5
1821
Female, age 72, unknown
60.5
2823
Male, age 76, right hemisphere
59.1
1954
Female, age 42, unknown
55.9
2503
Female, age 72, unknown
51.4
2588
Male, age 74, left hemisphere
43.4
2584
Male, age 75, left hemisphere
41.0
2725
Female, age 75, unknown
39.7
Substantia nigra nTPM: 34.4
1851
Male, age 51, unknown
42.5
2699
Male, age 18, unknown
38.6
1941
Male, age 53, unknown
37.4
2590
Female, age 75, unknown
37.3
2583
Male, age 75, right hemisphere
37.2
1889
Female, age 72, unknown
36.2
2409
Female, age 72, unknown
32.1
1916
Female, age 42, unknown
30.4
2241
Male, age 72, unknown
26.3
2665
Male, age 74, both hemispheres
25.8
Superior colliculus nTPM: 43.8
1913
Female, age 42, unknown
90.7
1995
Male, age 72, unknown
69.5
2587
Male, age 74, left hemisphere
44.6
1839
Male, age 51, unknown
38.8
2668
Female, age 75, unknown
38.2
1796
Male, age 53, unknown
33.8
1895
Male, age 76, right hemisphere
33.7
2087
Female, age 72, unknown
32.8
2664
Male, age 75, both hemispheres
30.3
2261
Male, age 18, unknown
25.9
Ventral tegmental area nTPM: 49.0
2223
Female, age 72, unknown
74.1
2021
Male, age 53, unknown
53.7
2410
Female, age 72, unknown
46.5
1942
Male, age 51, unknown
40.9
2218
Male, age 76, both hemispheres
40.6
1915
Female, age 42, unknown
37.9
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
34.3
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 34.3
Samples: 139
Max nTPM: 102.9
Min nTPM: 8.7
Std nTPM: 15.8
Median nTPM: 31.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
102.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
100.6
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
91.8
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
85.6
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
80.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
65.2
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
63.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
62.6
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
62.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
57.8
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
53.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
52.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
52.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
51.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
50.9
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
49.2
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
48.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
48.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
48.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
47.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
46.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
45.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
45.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
44.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
44.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
43.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
43.4
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
43.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
42.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
42.3
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
41.2
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
40.4
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
39.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
38.9
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
38.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
38.2
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
37.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
37.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
37.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
37.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
37.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
37.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
37.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
37.0
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
36.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
36.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
36.5
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
36.2
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
36.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
36.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
35.3
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
35.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
34.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
34.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
34.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
34.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
33.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
33.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
33.2
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
33.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
32.6
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
32.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
32.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
32.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
32.4
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
32.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
32.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
31.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
31.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
31.5
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
31.4
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
31.2
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
30.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
30.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
30.5
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
30.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
30.5
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
30.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
30.0
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
30.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
29.9
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
29.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
29.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
28.8
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
28.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
28.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
28.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
27.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
27.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
27.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
27.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
27.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
27.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
27.3
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
27.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
27.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
27.0
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
26.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
26.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
25.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
25.1
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
25.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
24.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
24.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
23.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
23.6
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
23.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
23.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
23.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
22.8
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
22.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
22.5
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
22.4
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
22.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
22.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
21.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
21.5
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
21.2
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
20.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
20.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
20.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
19.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
19.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
19.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
19.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
18.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
18.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
18.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
18.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
17.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
16.9
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
16.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
15.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
15.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
14.1
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
13.5
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
13.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
12.9
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
8.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
16.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 16.5
Samples: 4
Max nTPM: 19.3
Min nTPM: 14.6
Sample A
Male
19.3
Sample B
Male
15.6
Sample C
Female
14.6
Sample D
Female
16.4
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.