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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
487.9
Sample id
Sample description
nTPM
Amygdala nTPM: 150.0
2517
Female, age 94, left hemisphere
302.1
1987
Female, age 91, left hemisphere
265.4
2514
Male, age 75, right hemisphere
144.4
2814
Male, age 76, right hemisphere
20.6
2695
Female, age 67, right hemisphere
17.6
Basal amygdala nTPM: 481.0
2243
Female, age 91, right hemisphere
849.4
2110
Male, age 80, left hemisphere
603.2
2685
Female, age 94, left hemisphere
571.9
2827
Female, age 67, right hemisphere
359.3
2609
Male, age 75, right hemisphere
271.8
1955
Male, age 76, both hemispheres
230.2
Central amygdala nTPM: 181.6
2239
Male, age 80, left hemisphere
478.9
2826
Female, age 94, left hemisphere
356.1
2515
Male, age 75, right hemisphere
59.4
2701
Female, age 91, right hemisphere
12.4
1905
Male, age 76, both hemispheres
1.1
Corticomedial amygdala nTPM: 487.9
2242
Female, age 91, right hemisphere
838.5
2829
Male, age 80, left hemisphere
742.3
2535
Female, age 67, right hemisphere
463.7
2429
Female, age 94, left hemisphere
430.5
2428
Male, age 75, right hemisphere
235.8
2240
Male, age 76, both hemispheres
216.7
Lateral amygdala nTPM: 243.6
2534
Female, age 94, left hemisphere
494.6
2256
Male, age 80, left hemisphere
423.2
1883
Male, age 76, both hemispheres
152.4
2830
Female, age 67, right hemisphere
145.3
2255
Female, age 91, right hemisphere
141.7
2516
Male, age 75, right hemisphere
104.4
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
281.1
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 281.1
Samples: 181
Max nTPM: 673.9
Min nTPM: 2.6
Std nTPM: 169.0
Median nTPM: 270.1
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
673.9
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
670.6
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
642.0
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
633.8
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
625.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
600.5
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
597.6
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
597.5
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
594.4
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
591.1
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
580.7
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
577.0
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
573.0
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
567.6
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
560.4
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
559.5
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
557.2
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
552.3
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
528.6
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
526.9
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
520.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
510.9
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
507.7
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
506.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
501.1
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
495.8
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
486.5
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
481.2
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
477.5
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
474.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
474.6
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
457.2
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
449.1
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
448.6
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
437.1
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
432.9
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
428.6
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
423.1
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
420.7
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
420.4
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
420.1
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
410.1
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
408.8
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
404.5
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
391.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
390.0
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
389.1
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
383.4
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
382.5
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
382.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
379.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
379.0
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
377.9
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
376.9
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
376.6
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
376.5
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
368.9
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
368.1
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
364.4
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
355.0
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
353.7
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
350.2
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
346.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
342.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
340.7
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
340.3
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
336.7
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
336.6
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
335.8
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
334.7
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
316.7
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
316.3
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
311.7
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
309.9
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
309.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
309.4
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
308.1
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
306.3
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
303.9
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
303.8
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
301.3
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
295.2
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
293.3
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
287.8
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
286.1
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
282.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
281.6
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
276.8
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
272.7
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
272.7
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
270.1
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
265.6
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
259.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
259.7
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
250.7
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
238.7
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
235.7
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
234.5
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
234.2
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
230.9
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
229.7
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
228.8
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
224.9
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
222.2
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
220.3
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
219.9
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
218.1
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
214.0
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
211.1
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
206.3
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
204.2
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
198.5
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
189.9
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
185.8
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
185.7
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
185.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
183.6
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
182.1
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
178.4
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
173.8
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
172.2
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
170.6
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
169.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
167.6
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
167.0
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
161.4
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
154.4
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
149.1
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
143.9
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
143.5
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
143.3
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
143.0
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
142.5
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
140.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
135.9
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
135.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
129.4
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
127.3
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
127.2
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
127.1
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
124.5
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
122.7
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
121.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
116.0
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
115.8
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
115.6
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
115.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
104.6
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
104.4
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
98.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
95.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
95.2
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
94.8
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
92.8
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
91.4
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
89.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
88.7
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
88.0
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
87.4
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
84.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
80.8
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
76.4
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
72.5
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
70.7
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
69.5
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
66.4
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
65.6
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
64.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
60.7
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
60.2
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
55.0
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
54.6
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
53.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
52.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
51.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
40.8
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
36.1
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
30.3
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
28.1
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
25.4
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
2.6
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
265.6
Pig sample
Sample description
nTPM
Amygdala nTPM: 265.6
Samples: 4
Max nTPM: 441.5
Min nTPM: 107.6
Sample A
Female
441.5
Sample B
Female
107.6
Sample C
Male
257.4
Sample D
Male
255.8
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
753.7
Mouse sample
Sample description
nTPM
Amygdala nTPM: 753.7
Samples: 4
Max nTPM: 778.0
Min nTPM: 727.5
Sample A
Male
778.0
Sample B
Male
761.9
Sample C
Female
747.2
Sample D
Female
727.5
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
