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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
57.6
nTPM
Monaco:
54.5
nTPM
Schmiedel:
82.7
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
57.6
HPA sample
nTPM
gdT-cell nTPM: 40.4
Samples: 6
Max nTPM: 49.5
Min nTPM: 27.7
P10809_1007
27.7
P10809_1022
49.5
P10809_1041
44.0
P10809_1060
39.9
P10809_1077
39.6
P10809_1098
41.6
MAIT T-cell nTPM: 43.1
Samples: 6
Max nTPM: 53.0
Min nTPM: 29.6
P10809_1006
30.5
P10809_1024
29.6
P10809_1043
53.0
P10809_1062
45.9
P10809_1083
52.3
P10809_1097
47.1
Memory CD4 T-cell nTPM: 43.2
Samples: 6
Max nTPM: 61.9
Min nTPM: 34.2
P10809_1014
34.2
P10809_1026
61.9
P10809_1045
46.6
P10809_1064
35.7
P10809_1086
37.8
P10809_1113
43.1
Memory CD8 T-cell nTPM: 46.8
Samples: 5
Max nTPM: 61.8
Min nTPM: 30.4
P10809_1012
30.4
P10809_1027
61.8
P10809_1046
50.8
P10809_1065
40.6
P10809_1111
50.3
Naive CD4 T-cell nTPM: 31.6
Samples: 6
Max nTPM: 45.8
Min nTPM: 25.1
P10809_1015
25.1
P10809_1030
33.0
P10809_1049
45.8
P10809_1068
29.2
P10809_1085
29.7
P10809_1112
26.5
Naive CD8 T-cell nTPM: 38.6
Samples: 6
Max nTPM: 53.1
Min nTPM: 23.1
P10809_1016
23.1
P10809_1031
31.6
P10809_1050
38.0
P10809_1069
53.1
P10809_1087
47.7
P10809_1110
37.8
T-reg nTPM: 57.6
Samples: 6
Max nTPM: 73.6
Min nTPM: 31.5
P10809_1018
60.5
P10809_1037
55.7
P10809_1056
31.5
P10809_1075
62.9
P10809_1094
73.6
P10809_1106
61.5
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
54.5
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 30.8
Samples: 4
Max nTPM: 47.4
Min nTPM: 14.7
RHH5202_R3573
36.1
RHH5230_R3602
14.7
RHH5259_R3631
24.9
RHH5288_R3660
47.4
Effector memory CD8 T-cell nTPM: 47.3
Samples: 4
Max nTPM: 77.8
Min nTPM: 7.5
RHH5203_R3574
64.1
RHH5231_R3603
39.6
RHH5260_R3632
7.5
RHH5289_R3661
77.8
MAIT T-cell nTPM: 47.5
Samples: 4
Max nTPM: 83.7
Min nTPM: 21.8
RHH5233_R3605
83.7
RHH5205_R3576
40.8
RHH5262_R3634
21.8
RHH5297_R3663
43.8
Memory CD4 T-cell TFH nTPM: 53.4
Samples: 4
Max nTPM: 61.5
Min nTPM: 38.9
RHH5300_R3666
61.5
RHH5236_R3608
53.1
RHH5265_R3637
38.9
RHH5208_R3579
59.9
Memory CD4 T-cell Th1 nTPM: 36.5
Samples: 4
Max nTPM: 64.6
Min nTPM: 19.0
RHH5210_R3581
22.5
RHH5302_R3668
64.6
RHH5238_R3610
19.0
RHH5267_R3639
39.7
Memory CD4 T-cell Th1/Th17 nTPM: 30.8
Samples: 4
Max nTPM: 63.0
Min nTPM: 9.4
RHH5303_R3669
63.0
RHH5211_R3582
9.4
RHH5239_R3611
27.5
RHH5268_R3640
23.3
Memory CD4 T-cell Th17 nTPM: 30.7
Samples: 4
Max nTPM: 43.7
Min nTPM: 17.5
RHH5304_R3670
43.7
RHH5212_R3583
17.5
RHH5240_R3612
40.8
RHH5269_R3641
20.7
Memory CD4 T-cell Th2 nTPM: 39.7
Samples: 4
Max nTPM: 52.1
Min nTPM: 28.2
RHH5305_R3671
39.0
RHH5213_R3584
52.1
RHH5241_R3613
39.3
RHH5270_R3642
28.2
Naive CD4 T-cell nTPM: 22.3
Samples: 4
Max nTPM: 38.4
Min nTPM: 0.6
RHH5306_R3672
38.4
RHH5214_R3585
0.6
RHH5242_R3614
25.5
RHH5271_R3643
24.5
Naive CD8 T-cell nTPM: 20.8
Samples: 4
Max nTPM: 27.1
Min nTPM: 7.4
RHH5201_R3572
27.1
RHH5229_R3601
23.4
RHH5258_R3630
7.4
RHH5287_R3659
25.3
Non-Vd2 gdTCR nTPM: 43.0
Samples: 4
Max nTPM: 54.1
Min nTPM: 34.1
RHH5235_R3607
38.4
RHH5264_R3636
54.1
RHH5207_R3578
45.2
RHH5299_R3665
34.1
T-reg nTPM: 46.4
Samples: 4
Max nTPM: 78.0
Min nTPM: 15.0
RHH5301_R3667
39.3
RHH5237_R3609
78.0
RHH5266_R3638
15.0
RHH5209_R3580
53.4
Terminal effector memory CD4 T-cell nTPM: 8.9
Samples: 2
Max nTPM: 13.1
Min nTPM: 4.6
RHH5243_R3615
13.1
RHH5272_R3644
4.6
Terminal effector memory CD8 T-cell nTPM: 54.5
Samples: 4
Max nTPM: 80.7
Min nTPM: 26.4
RHH5232_R3604
26.4
RHH5204_R3575
80.7
RHH5261_R3633
41.1
RHH5296_R3662
69.9
Vd2 gdTCR nTPM: 51.8
Samples: 4
Max nTPM: 73.9
Min nTPM: 32.6
RHH5234_R3606
52.2
RHH5206_R3577
73.9
RHH5263_R3635
32.6
RHH5298_R3664
48.6
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
