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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
71.3
nTPM
Monaco:
124.6
nTPM
Schmiedel:
73.5
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
71.3
HPA sample
nTPM
gdT-cell nTPM: 55.1
Samples: 6
Max nTPM: 73.4
Min nTPM: 35.0
P10809_1007
58.6
P10809_1022
50.6
P10809_1041
73.4
P10809_1060
49.8
P10809_1077
35.0
P10809_1098
63.3
MAIT T-cell nTPM: 44.9
Samples: 6
Max nTPM: 55.8
Min nTPM: 39.9
P10809_1006
44.4
P10809_1024
39.9
P10809_1043
41.4
P10809_1062
47.2
P10809_1083
40.7
P10809_1097
55.8
Memory CD4 T-cell nTPM: 48.7
Samples: 6
Max nTPM: 60.7
Min nTPM: 36.0
P10809_1014
50.4
P10809_1026
51.7
P10809_1045
49.9
P10809_1064
43.3
P10809_1086
36.0
P10809_1113
60.7
Memory CD8 T-cell nTPM: 53.7
Samples: 5
Max nTPM: 69.2
Min nTPM: 39.4
P10809_1012
69.2
P10809_1027
39.4
P10809_1046
63.2
P10809_1065
44.6
P10809_1111
52.0
Naive CD4 T-cell nTPM: 33.8
Samples: 6
Max nTPM: 46.4
Min nTPM: 20.6
P10809_1015
38.9
P10809_1030
20.6
P10809_1049
30.2
P10809_1068
30.9
P10809_1085
36.0
P10809_1112
46.4
Naive CD8 T-cell nTPM: 40.4
Samples: 6
Max nTPM: 50.8
Min nTPM: 24.9
P10809_1016
43.1
P10809_1031
24.9
P10809_1050
46.9
P10809_1069
50.8
P10809_1087
38.3
P10809_1110
38.6
T-reg nTPM: 71.3
Samples: 6
Max nTPM: 97.2
Min nTPM: 47.3
P10809_1018
90.1
P10809_1037
61.2
P10809_1056
97.2
P10809_1075
47.3
P10809_1094
60.7
P10809_1106
71.4
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
124.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 84.3
Samples: 4
Max nTPM: 132.9
Min nTPM: 31.7
RHH5202_R3573
59.9
RHH5230_R3602
112.8
RHH5259_R3631
31.7
RHH5288_R3660
132.9
Effector memory CD8 T-cell nTPM: 124.6
Samples: 4
Max nTPM: 161.5
Min nTPM: 61.3
RHH5203_R3574
146.9
RHH5231_R3603
128.7
RHH5260_R3632
61.3
RHH5289_R3661
161.5
MAIT T-cell nTPM: 116.7
Samples: 4
Max nTPM: 129.9
Min nTPM: 93.0
RHH5233_R3605
117.3
RHH5205_R3576
129.9
RHH5262_R3634
93.0
RHH5297_R3663
126.5
Memory CD4 T-cell TFH nTPM: 99.7
Samples: 4
Max nTPM: 131.3
Min nTPM: 66.8
RHH5300_R3666
131.3
RHH5236_R3608
71.9
RHH5265_R3637
66.8
RHH5208_R3579
128.8
Memory CD4 T-cell Th1 nTPM: 103.8
Samples: 4
Max nTPM: 155.1
Min nTPM: 65.6
RHH5210_R3581
107.9
RHH5302_R3668
155.1
RHH5238_R3610
86.7
RHH5267_R3639
65.6
Memory CD4 T-cell Th1/Th17 nTPM: 112.4
Samples: 4
Max nTPM: 155.0
Min nTPM: 64.1
RHH5303_R3669
139.7
RHH5211_R3582
155.0
RHH5239_R3611
90.6
RHH5268_R3640
64.1
Memory CD4 T-cell Th17 nTPM: 116.5
Samples: 4
Max nTPM: 162.6
Min nTPM: 70.4
RHH5304_R3670
162.6
RHH5212_R3583
93.8
RHH5240_R3612
139.0
RHH5269_R3641
70.4
Memory CD4 T-cell Th2 nTPM: 91.9
Samples: 4
Max nTPM: 101.5
Min nTPM: 72.5
RHH5305_R3671
92.7
RHH5213_R3584
101.0
RHH5241_R3613
101.5
RHH5270_R3642
72.5
Naive CD4 T-cell nTPM: 79.0
Samples: 4
Max nTPM: 99.0
Min nTPM: 59.2
RHH5306_R3672
99.0
RHH5214_R3585
59.4
RHH5242_R3614
98.2
RHH5271_R3643
59.2
Naive CD8 T-cell nTPM: 61.8
Samples: 4
Max nTPM: 92.0
Min nTPM: 34.2
RHH5201_R3572
58.5
RHH5229_R3601
34.2
RHH5258_R3630
62.6
RHH5287_R3659
92.0
Non-Vd2 gdTCR nTPM: 109.2
Samples: 4
Max nTPM: 163.8
Min nTPM: 60.2
RHH5235_R3607
141.5
RHH5264_R3636
71.3
RHH5207_R3578
60.2
RHH5299_R3665
163.8
T-reg nTPM: 79.9
Samples: 4
Max nTPM: 96.3
Min nTPM: 61.8
RHH5301_R3667
96.3
RHH5237_R3609
89.0
RHH5266_R3638
61.8
RHH5209_R3580
72.4
Terminal effector memory CD4 T-cell nTPM: 69.0
Samples: 2
Max nTPM: 84.0
Min nTPM: 53.9
RHH5243_R3615
84.0
RHH5272_R3644
53.9
Terminal effector memory CD8 T-cell nTPM: 120.3
Samples: 4
Max nTPM: 175.7
Min nTPM: 65.4
RHH5232_R3604
142.9
RHH5204_R3575
97.0
RHH5261_R3633
65.4
RHH5296_R3662
175.7
Vd2 gdTCR nTPM: 110.3
Samples: 4
Max nTPM: 134.7
Min nTPM: 83.1
RHH5234_R3606
98.2
RHH5206_R3577
125.3
RHH5263_R3635
83.1
RHH5298_R3664
134.7
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
