MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48.3 nTPM
HPA Brain:110.9 nTPM
GTEx:48.3 nTPM
FANTOM5:30.1 Scaled Tags Per Million
Pig:20.5 nTPM
Mouse:3.1 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 110.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81.9
2586 Male, age 75, left hemisphere 207.8
2828 Female, age 72, unknown 113.8
1870 Female, age 42, unknown 81.0
1827 Male, age 72, unknown 76.1
2666 Male, age 74, left hemisphere 75.7
2411 Female, age 72, unknown 71.5
1833 Male, age 53, unknown 67.5
1830 Male, age 51, unknown 60.9
2019 Male, age 18, unknown 32.4
2219 Male, age 76, both hemispheres 32.0
Dorsal raphe nucleus
nTPM: 81.6
2016 Female, age 72, unknown 102.5
2047 Male, age 72, unknown 94.3
2298 Female, age 72, unknown 86.9
1828 Male, age 53, unknown 74.9
2750 Male, age 76, both hemispheres 49.5
Inferior colliculus
nTPM: 63.5
2849 Male, age 72, unknown 72.8
1848 Female, age 42, unknown 70.6
1890 Male, age 53, unknown 56.5
2097 Female, age 72, unknown 54.3
Median raphe nucleus
nTPM: 41.4
2220 Male, age 76, midline 41.4
Periaquaductal grey, anterior
nTPM: 110.9
1947 Male, age 18, unknown 122.1
1795 Male, age 51, unknown 111.7
2502 Female, age 75, unknown 98.9
Periaquaductal grey, dorsal
nTPM: 86.4
1840 Male, age 53, unknown 113.8
2464 Female, age 72, unknown 92.7
2850 Male, age 76, both hemispheres 70.3
1831 Male, age 72, unknown 68.8
Periaquaductal grey, lateral
nTPM: 95.3
2053 Male, age 18, unknown 124.4
2140 Male, age 76, both hemispheres 99.5
2272 Male, age 74, both hemispheres 62.0
Pretectal area
nTPM: 72.9
2825 Male, age 18, unknown 101.3
2224 Female, age 72, unknown 91.8
2667 Female, age 75, unknown 84.2
2316 Male, age 76, right hemisphere 82.3
1944 Female, age 72, unknown 72.0
2407 Male, age 75, both hemispheres 71.1
2273 Male, age 74, both hemispheres 70.5
1817 Female, age 42, unknown 61.1
1816 Male, age 51, unknown 60.5
1815 Male, age 53, unknown 57.9
2007 Male, age 72, unknown 49.0
Red nucleus
nTPM: 68.1
2503 Female, age 72, unknown 85.4
2725 Female, age 75, unknown 83.5
1954 Female, age 42, unknown 76.6
2227 Male, age 72, unknown 75.5
2769 Male, age 72, unknown 75.1
2584 Male, age 75, left hemisphere 72.8
2588 Male, age 74, left hemisphere 64.6
2823 Male, age 76, right hemisphere 64.6
1865 Male, age 51, unknown 62.3
1821 Female, age 72, unknown 59.4
1904 Male, age 53, unknown 57.4
2785 Male, age 18, unknown 39.6
Substantia nigra
nTPM: 65.5
2699 Male, age 18, unknown 96.6
1851 Male, age 51, unknown 75.3
2583 Male, age 75, right hemisphere 73.3
1916 Female, age 42, unknown 73.0
2409 Female, age 72, unknown 62.8
2590 Female, age 75, unknown 59.1
1889 Female, age 72, unknown 57.8
2665 Male, age 74, both hemispheres 54.5
2241 Male, age 72, unknown 54.4
1941 Male, age 53, unknown 48.3
Superior colliculus
nTPM: 75.0
2664 Male, age 75, both hemispheres 110.3
1796 Male, age 53, unknown 94.0
2261 Male, age 18, unknown 83.8
1995 Male, age 72, unknown 82.9
1839 Male, age 51, unknown 74.2
2087 Female, age 72, unknown 70.2
1913 Female, age 42, unknown 69.9
2668 Female, age 75, unknown 60.2
2587 Male, age 74, left hemisphere 55.9
1895 Male, age 76, right hemisphere 49.0
Ventral tegmental area
nTPM: 71.0
2021 Male, age 53, unknown 94.5
1942 Male, age 51, unknown 84.8
1915 Female, age 42, unknown 76.4
2410 Female, age 72, unknown 68.3
2218 Male, age 76, both hemispheres 57.5
2223 Female, age 72, unknown 44.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 48.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.3
Samples: 139

Max nTPM: 175.8
Min nTPM: 4.8
Std nTPM: 27.1
Median nTPM: 44.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 175.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 122.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 120.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 118.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 115.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 101.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 96.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 96.4
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 95.4
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 92.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 91.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 30.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.1
FF:10158-103A5 76 years, female 30.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 20.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.6
Samples: 4

Max nTPM: 28.6
Min nTPM: 15.6
Sample A Female 19.3
Sample B Female 28.6
Sample C Male 15.6
Sample D Male 18.7
Midbrain
nTPM: 15.7
Samples: 4

Max nTPM: 22.9
Min nTPM: 11.4
Sample A Female 22.9
Sample B Female 15.2
Sample C Male 13.4
Sample D Male 11.4
Periaqueductal gray
nTPM: 16.3
Samples: 3

Max nTPM: 16.9
Min nTPM: 15.7
Sample B Female 16.4
Sample C Male 16.9
Sample D Male 15.7
Superior colliculi
nTPM: 12.6
Samples: 4

Max nTPM: 15.9
Min nTPM: 9.1
Sample A Female 15.9
Sample B Female 9.1
Sample C Male 11.2
Sample D Male 14.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 3.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.1
Samples: 4

Max nTPM: 3.5
Min nTPM: 2.8
Sample A Male 3.5
Sample B Male 2.8
Sample C Female 2.9
Sample D Female 3.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71212036 Antisense, RP_050816_02_F07, Mouse strain C57BL/6J (56 days, male) 0.1
69818012 Antisense, RP_050510_04_C02, Mouse strain C57BL/6J (56 days, male) 0.0

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