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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
64.2
nTPM
HPA Brain:
79.6
nTPM
GTEx:
64.2
nTPM
FANTOM5:
43.7
Scaled Tags Per Million
Pig:
49.5
nTPM
Mouse:
47.9
nTPM
Allen mouse:
4.7
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
79.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 73.2
2586
Male, age 75, left hemisphere
99.6
2666
Male, age 74, left hemisphere
84.9
1827
Male, age 72, unknown
79.3
2411
Female, age 72, unknown
71.9
2219
Male, age 76, both hemispheres
71.8
2828
Female, age 72, unknown
70.7
2019
Male, age 18, unknown
67.3
1870
Female, age 42, unknown
64.3
1833
Male, age 53, unknown
61.5
1830
Male, age 51, unknown
60.5
Dorsal raphe nucleus nTPM: 70.9
2047
Male, age 72, unknown
80.7
2298
Female, age 72, unknown
75.4
2750
Male, age 76, both hemispheres
74.2
1828
Male, age 53, unknown
70.5
2016
Female, age 72, unknown
53.7
Inferior colliculus nTPM: 59.3
2097
Female, age 72, unknown
64.9
1890
Male, age 53, unknown
59.9
1848
Female, age 42, unknown
58.3
2849
Male, age 72, unknown
54.0
Median raphe nucleus nTPM: 76.6
2220
Male, age 76, midline
76.6
Periaquaductal grey, anterior nTPM: 76.6
1947
Male, age 18, unknown
79.4
1795
Male, age 51, unknown
76.4
2502
Female, age 75, unknown
73.9
Periaquaductal grey, dorsal nTPM: 56.3
1831
Male, age 72, unknown
61.6
1840
Male, age 53, unknown
58.7
2464
Female, age 72, unknown
54.0
2850
Male, age 76, both hemispheres
50.9
Periaquaductal grey, lateral nTPM: 51.9
2053
Male, age 18, unknown
60.3
2272
Male, age 74, both hemispheres
48.5
2140
Male, age 76, both hemispheres
46.9
Pretectal area nTPM: 69.8
1816
Male, age 51, unknown
86.8
2007
Male, age 72, unknown
84.6
1817
Female, age 42, unknown
80.6
1815
Male, age 53, unknown
75.9
1944
Female, age 72, unknown
75.8
2667
Female, age 75, unknown
74.1
2407
Male, age 75, both hemispheres
66.5
2825
Male, age 18, unknown
65.0
2224
Female, age 72, unknown
61.2
2316
Male, age 76, right hemisphere
52.7
2273
Male, age 74, both hemispheres
44.9
Red nucleus nTPM: 64.0
2584
Male, age 75, left hemisphere
81.4
2588
Male, age 74, left hemisphere
74.7
1821
Female, age 72, unknown
73.4
2785
Male, age 18, unknown
63.8
1954
Female, age 42, unknown
62.5
1904
Male, age 53, unknown
61.9
2227
Male, age 72, unknown
59.8
1865
Male, age 51, unknown
59.0
2769
Male, age 72, unknown
59.0
2823
Male, age 76, right hemisphere
58.9
2503
Female, age 72, unknown
58.4
2725
Female, age 75, unknown
55.6
Substantia nigra nTPM: 79.6
2665
Male, age 74, both hemispheres
98.9
1916
Female, age 42, unknown
95.2
1851
Male, age 51, unknown
87.5
2583
Male, age 75, right hemisphere
81.7
1941
Male, age 53, unknown
81.0
1889
Female, age 72, unknown
75.3
2590
Female, age 75, unknown
69.8
2241
Male, age 72, unknown
69.7
2699
Male, age 18, unknown
69.7
2409
Female, age 72, unknown
67.1
Superior colliculus nTPM: 67.5
2668
Female, age 75, unknown
82.9
2664
Male, age 75, both hemispheres
80.4
1796
Male, age 53, unknown
73.2
2087
Female, age 72, unknown
71.4
2261
Male, age 18, unknown
70.6
1839
Male, age 51, unknown
63.4
1895
Male, age 76, right hemisphere
60.8
2587
Male, age 74, left hemisphere
58.4
1913
Female, age 42, unknown
57.6
1995
Male, age 72, unknown
55.7
Ventral tegmental area nTPM: 74.4
2410
Female, age 72, unknown
81.3
1915
Female, age 42, unknown
80.2
2218
Male, age 76, both hemispheres
78.9
1942
Male, age 51, unknown
72.0
2021
Male, age 53, unknown
67.9
2223
Female, age 72, unknown
66.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
64.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 64.2
Samples: 139
Max nTPM: 115.5
Min nTPM: 36.7
Std nTPM: 13.5
Median nTPM: 62.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
115.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
103.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
95.4
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
92.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
90.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
89.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
88.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
87.2
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
85.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
84.0
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
83.8
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
83.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
82.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
82.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
81.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
81.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
80.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
79.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
79.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
79.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
78.4
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
78.3
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
77.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
77.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
77.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
76.5
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
75.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
75.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
75.3
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
75.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
74.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
73.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
72.9
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
72.1
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
71.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
71.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
71.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
71.5
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
71.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
70.8
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
70.6
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
70.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
70.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
69.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
68.9
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
68.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
68.6
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
68.4
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
68.1
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
68.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
68.0
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
67.6
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
67.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
67.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
66.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
66.7
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
66.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
66.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
64.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
64.5
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
64.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
64.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
63.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
63.7
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
63.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
63.1
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
62.8
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
62.7
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
62.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
62.3
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
61.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
61.6
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
61.6
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
61.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
61.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
61.2
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
61.0
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
61.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
60.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
60.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
60.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
60.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
60.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
60.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
60.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
59.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
59.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
59.5
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
59.3
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
59.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
59.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
58.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
58.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
58.5
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
58.3
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
57.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
56.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
56.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
56.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
56.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
55.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
55.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
55.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
55.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
54.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
54.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
54.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
54.7
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
54.1
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
53.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
53.9
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
52.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
52.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
52.1
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
51.6
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
51.6
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
51.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
51.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
50.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
49.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
49.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
49.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
48.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
47.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
47.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
46.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
46.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
46.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
44.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
44.5
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
44.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
44.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
44.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
43.9
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
43.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
42.2
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
39.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
37.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
36.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
47.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 47.9
Samples: 4
Max nTPM: 50.6
Min nTPM: 45.6
Sample A
Male
47.0
Sample B
Male
48.4
Sample C
Female
50.6
Sample D
Female
45.6
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.