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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:306.7 nTPM
HPA Brain:285.6 nTPM
GTEx:306.7 nTPM
FANTOM5:74.0 Scaled Tags Per Million
Pig:0.6 nTPM
Mouse:86.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

285.6
Sample id Sample description nTPM
Amygdala
nTPM: 258.7
2695 Female, age 67, right hemisphere 321.0
1987 Female, age 91, left hemisphere 261.6
2517 Female, age 94, left hemisphere 252.4
2814 Male, age 76, right hemisphere 237.1
2514 Male, age 75, right hemisphere 221.3
Basal amygdala
nTPM: 208.1
2609 Male, age 75, right hemisphere 349.1
2827 Female, age 67, right hemisphere 206.3
2110 Male, age 80, left hemisphere 197.2
2243 Female, age 91, right hemisphere 182.8
1955 Male, age 76, both hemispheres 165.4
2685 Female, age 94, left hemisphere 147.8
Central amygdala
nTPM: 285.6
2515 Male, age 75, right hemisphere 455.9
1905 Male, age 76, both hemispheres 299.6
2826 Female, age 94, left hemisphere 299.6
2239 Male, age 80, left hemisphere 219.9
2701 Female, age 91, right hemisphere 152.9
Corticomedial amygdala
nTPM: 196.6
2428 Male, age 75, right hemisphere 343.1
2535 Female, age 67, right hemisphere 207.9
2829 Male, age 80, left hemisphere 185.8
2242 Female, age 91, right hemisphere 183.5
2429 Female, age 94, left hemisphere 146.0
2240 Male, age 76, both hemispheres 113.2
Lateral amygdala
nTPM: 276.1
2516 Male, age 75, right hemisphere 385.0
2256 Male, age 80, left hemisphere 336.6
2830 Female, age 67, right hemisphere 305.5
2534 Female, age 94, left hemisphere 224.0
2255 Female, age 91, right hemisphere 214.8
1883 Male, age 76, both hemispheres 190.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

306.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 306.7
Samples: 181

Max nTPM: 768.5
Min nTPM: 73.3
Std nTPM: 134.3
Median nTPM: 281.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 768.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 755.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 685.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 663.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 589.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 576.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 572.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 566.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 546.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 543.6
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 533.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 529.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 523.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 517.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 513.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 511.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 501.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 500.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 488.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 484.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 480.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 477.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 473.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 466.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 464.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 462.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 457.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 452.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 446.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 446.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 442.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 439.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 434.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 429.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 426.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 425.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 424.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 421.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 414.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 414.2
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 412.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 412.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 406.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 406.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 397.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 388.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 388.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 385.0
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 383.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 381.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 374.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 373.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 372.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 370.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 364.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 362.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 361.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 351.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 350.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 345.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 344.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 342.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 337.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 336.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 335.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 332.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 331.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 326.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 323.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 321.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 320.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 319.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 316.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 314.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 313.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 312.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 310.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 306.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 303.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 301.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 298.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 298.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 296.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 294.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 293.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 292.6
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 290.8
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 288.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 287.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 283.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 281.0
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 279.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 279.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 278.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 278.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 276.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 270.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 270.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 269.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 268.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 267.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 266.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 265.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 264.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 259.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 256.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 254.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 252.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 250.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 250.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 248.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 247.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 245.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 245.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 234.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 231.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 230.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 230.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 228.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 226.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 225.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 221.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 220.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 219.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 216.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 216.6
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 215.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 214.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 212.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 210.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 206.1
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 205.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 205.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 201.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 198.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 197.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 196.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 196.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 193.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 193.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 192.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 191.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 190.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 189.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 187.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 187.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 186.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 182.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 178.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 177.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 176.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 176.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 175.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 174.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 173.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 173.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 172.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 170.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 170.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 165.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 162.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 162.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 160.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 159.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 157.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 152.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 150.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 149.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 147.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 142.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 140.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 137.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 137.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 119.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 119.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 115.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 112.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 107.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 107.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 90.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 73.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

74.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 74.0
FF:10151-102I7 76 years, female 74.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.6
Pig sample Sample description nTPM
Amygdala
nTPM: 0.6
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.3
Sample A Female 0.5
Sample B Female 0.5
Sample C Male 0.3
Sample D Male 0.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

86.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 86.8
Samples: 4

Max nTPM: 110.3
Min nTPM: 78.2
Sample A Male 78.2
Sample B Male 78.2
Sample C Female 110.3
Sample D Female 80.3

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