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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
36.8
nTPM
Monaco:
12.7
nTPM
Schmiedel:
24.8
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.8
HPA sample
nTPM
gdT-cell nTPM: 20.1
Samples: 6
Max nTPM: 25.0
Min nTPM: 14.4
P10809_1007
20.6
P10809_1022
25.0
P10809_1041
14.4
P10809_1060
19.7
P10809_1077
20.7
P10809_1098
20.3
MAIT T-cell nTPM: 19.4
Samples: 6
Max nTPM: 24.9
Min nTPM: 12.9
P10809_1006
21.4
P10809_1024
12.9
P10809_1043
15.3
P10809_1062
18.9
P10809_1083
24.9
P10809_1097
22.7
Memory CD4 T-cell nTPM: 25.6
Samples: 6
Max nTPM: 30.9
Min nTPM: 22.3
P10809_1014
25.8
P10809_1026
30.9
P10809_1045
22.3
P10809_1064
26.4
P10809_1086
22.3
P10809_1113
25.7
Memory CD8 T-cell nTPM: 21.7
Samples: 5
Max nTPM: 31.2
Min nTPM: 15.4
P10809_1012
31.2
P10809_1027
15.4
P10809_1046
25.4
P10809_1065
20.5
P10809_1111
15.9
Naive CD4 T-cell nTPM: 18.6
Samples: 6
Max nTPM: 22.9
Min nTPM: 15.4
P10809_1015
22.9
P10809_1030
18.2
P10809_1049
15.5
P10809_1068
22.2
P10809_1085
15.4
P10809_1112
17.1
Naive CD8 T-cell nTPM: 23.0
Samples: 6
Max nTPM: 27.4
Min nTPM: 17.9
P10809_1016
22.5
P10809_1031
27.4
P10809_1050
19.0
P10809_1069
26.0
P10809_1087
25.3
P10809_1110
17.9
T-reg nTPM: 36.8
Samples: 6
Max nTPM: 45.1
Min nTPM: 30.1
P10809_1018
37.6
P10809_1037
35.6
P10809_1056
45.1
P10809_1075
30.1
P10809_1094
36.7
P10809_1106
35.7
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.7
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 7.5
Samples: 4
Max nTPM: 15.1
Min nTPM: 1.9
RHH5202_R3573
9.1
RHH5230_R3602
3.8
RHH5259_R3631
1.9
RHH5288_R3660
15.1
Effector memory CD8 T-cell nTPM: 9.1
Samples: 4
Max nTPM: 16.2
Min nTPM: 5.2
RHH5203_R3574
16.2
RHH5231_R3603
8.3
RHH5260_R3632
6.8
RHH5289_R3661
5.2
MAIT T-cell nTPM: 8.0
Samples: 4
Max nTPM: 14.1
Min nTPM: 4.4
RHH5233_R3605
5.2
RHH5205_R3576
4.4
RHH5262_R3634
14.1
RHH5297_R3663
8.1
Memory CD4 T-cell TFH nTPM: 12.0
Samples: 4
Max nTPM: 17.5
Min nTPM: 4.6
RHH5300_R3666
4.6
RHH5236_R3608
17.5
RHH5265_R3637
9.3
RHH5208_R3579
16.7
Memory CD4 T-cell Th1 nTPM: 11.7
Samples: 4
Max nTPM: 18.6
Min nTPM: 3.8
RHH5210_R3581
10.1
RHH5302_R3668
18.6
RHH5238_R3610
14.4
RHH5267_R3639
3.8
Memory CD4 T-cell Th1/Th17 nTPM: 10.8
Samples: 4
Max nTPM: 19.9
Min nTPM: 5.7
RHH5303_R3669
19.9
RHH5211_R3582
6.2
RHH5239_R3611
5.7
RHH5268_R3640
11.2
Memory CD4 T-cell Th17 nTPM: 10.2
Samples: 4
Max nTPM: 14.6
Min nTPM: 8.1
RHH5304_R3670
9.9
RHH5212_R3583
14.6
RHH5240_R3612
8.1
RHH5269_R3641
8.1
Memory CD4 T-cell Th2 nTPM: 7.4
Samples: 4
Max nTPM: 12.7
Min nTPM: 2.8
RHH5305_R3671
12.7
RHH5213_R3584
5.1
RHH5241_R3613
9.0
RHH5270_R3642
2.8
Naive CD4 T-cell nTPM: 6.4
Samples: 4
Max nTPM: 10.4
Min nTPM: 3.9
RHH5306_R3672
7.5
RHH5214_R3585
10.4
RHH5242_R3614
3.9
RHH5271_R3643
3.9
Naive CD8 T-cell nTPM: 6.3
Samples: 4
Max nTPM: 8.4
Min nTPM: 4.2
RHH5201_R3572
6.3
RHH5229_R3601
4.2
RHH5258_R3630
6.2
RHH5287_R3659
8.4
Non-Vd2 gdTCR nTPM: 9.1
Samples: 4
Max nTPM: 12.8
Min nTPM: 4.5
RHH5235_R3607
8.8
RHH5264_R3636
10.4
RHH5207_R3578
4.5
RHH5299_R3665
12.8
T-reg nTPM: 12.8
Samples: 4
Max nTPM: 22.4
Min nTPM: 5.2
RHH5301_R3667
22.4
RHH5237_R3609
12.5
RHH5266_R3638
5.2
RHH5209_R3580
10.9
Terminal effector memory CD4 T-cell nTPM: 3.8
Samples: 2
Max nTPM: 5.4
Min nTPM: 2.2
RHH5243_R3615
2.2
RHH5272_R3644
5.4
Terminal effector memory CD8 T-cell nTPM: 11.1
Samples: 4
Max nTPM: 17.2
Min nTPM: 4.6
RHH5232_R3604
7.3
RHH5204_R3575
17.2
RHH5261_R3633
4.6
RHH5296_R3662
15.3
Vd2 gdTCR nTPM: 10.9
Samples: 4
Max nTPM: 16.6
Min nTPM: 4.7
RHH5234_R3606
6.6
RHH5206_R3577
16.6
RHH5263_R3635
4.7
RHH5298_R3664
15.8
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
