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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
23.3
nTPM
Monaco:
12.4
nTPM
Schmiedel:
6.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.3
HPA sample
nTPM
Memory B-cell nTPM: 23.3
Samples: 6
Max nTPM: 33.5
Min nTPM: 13.6
P10809_1017
22.9
P10809_1025
19.6
P10809_1044
13.6
P10809_1063
23.8
P10809_1092
26.2
P10809_1105
33.5
Naive B-cell nTPM: 21.8
Samples: 6
Max nTPM: 26.6
Min nTPM: 17.6
P10809_1011
22.7
P10809_1029
17.6
P10809_1048
22.8
P10809_1067
26.6
P10809_1091
21.4
P10809_1104
19.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 8.7
Samples: 4
Max nTPM: 18.1
Min nTPM: 1.3
RHH5310_R3677
5.1
RHH5218_R3590
1.3
RHH5247_R3619
18.1
RHH5276_R3648
10.3
Naive B-cell nTPM: 5.5
Samples: 4
Max nTPM: 11.1
Min nTPM: 0.7
RHH5308_R3675
11.1
RHH5216_R3588
1.6
RHH5245_R3617
8.5
RHH5274_R3646
0.7
Non-switched memory B-cell nTPM: 5.4
Samples: 4
Max nTPM: 12.0
Min nTPM: 0.6
RHH5309_R3676
12.0
RHH5217_R3589
0.6
RHH5246_R3618
5.8
RHH5275_R3647
3.3
Plasmablast nTPM: 12.4
Samples: 4
Max nTPM: 18.3
Min nTPM: 7.6
RHH5312_R3679
11.1
RHH5220_R3592
18.3
RHH5249_R3621
12.6
RHH5278_R3650
7.6
Switched memory B-cell nTPM: 7.1
Samples: 4
Max nTPM: 15.8
Min nTPM: 3.4
RHH5311_R3678
15.8
RHH5219_R3591
3.4
RHH5248_R3620
3.4
RHH5277_R3649
5.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
