HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni
Consensus:200.3 nTPM
HPA Brain:1100.5 nTPM
GTEx:200.3 nTPM
FANTOM5:129.2 Scaled Tags Per Million
Pig:73.0 nTPM
Mouse:44.7 nTPM
Allen mouse:10.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041862
Glial cells Low
Neuronal cells Not detected


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 1100.5
Sample id Sample description nTPM
Hippocampus
nTPM: 990.6
2529 Female, age 94, left hemisphere 1351.5
2621 Female, age 67, right hemisphere 1188.3
2148 Female, age 91, left hemisphere 893.9
1898 Male, age 80, left hemisphere 880.0
1855 Male, age 76, left hemisphere 817.3
1911 Female, age 85, right hemisphere 812.6
Dentate gyrus
nTPM: 1100.5
2530 Female, age 94, left hemisphere 1554.4
2531 Female, age 67, both hemispheres 1332.3
2010 Male, age 76, both hemispheres 1130.1
2246 Female, age 85, both hemispheres 1082.9
2528 Male, age 74, both hemispheres 843.0
1927 Female, age 91, both hemispheres 660.4
Entorhinal gyrus
nTPM: 920.3
2686 Male, age 75, right hemisphere 1194.3
2117 Female, age 91, right hemisphere 1046.3
2764 Male, age 80, right hemisphere 988.3
2613 Female, age 94, left hemisphere 868.2
1787 Male, age 76, left hemisphere 782.7
1938 Female, age 85, left hemisphere 641.7
Hippocampus, CA1
nTPM: 987.6
2749 Male, age 80, left hemisphere 1478.0
2527 Male, age 74, both hemispheres 1205.1
2045 Male, age 76, both hemispheres 844.4
2082 Female, age 91, right hemisphere 709.3
1873 Female, age 85, both hemispheres 701.3
Hippocampus, CA2
nTPM: 793.8
2437 Female, age 94, left hemisphere 879.9
1963 Male, age 80, left hemisphere 872.9
2113 Female, age 91, right hemisphere 824.9
1892 Male, age 76, both hemispheres 806.4
2249 Male, age 74, both hemispheres 717.3
1940 Female, age 85, left hemisphere 661.3
Hippocampus, CA3
nTPM: 993.5
2861 Female, age 67, both hemispheres 1440.6
2620 Female, age 94, left hemisphere 1035.7
2137 Male, age 80, left hemisphere 1014.0
1867 Male, age 76, both hemispheres 884.6
2436 Male, age 74, both hemispheres 817.7
1891 Female, age 85, both hemispheres 768.7
Parahippocampal cortex
nTPM: 847.2
2245 Female, age 91, both hemispheres 1204.7
2018 Male, age 76, both hemispheres 1189.4
2532 Female, age 72, left hemisphere 1065.5
2622 Female, age 67, right hemisphere 933.3
2692 Male, age 74, both hemispheres 824.5
1990 Female, age 91, right hemisphere 702.1
1933 Female, age 85, both hemispheres 691.7
2250 Female, age 67, right hemisphere 673.0
1850 Male, age 80, both hemispheres 609.5
2693 Female, age 94, both hemispheres 578.4
Perirhinal gyrus
nTPM: 650.4
2521 Female, age 94, right hemisphere 793.8
1794 Male, age 80, right hemisphere 700.3
2848 Male, age 76, right hemisphere 617.6
1841 Female, age 85, right hemisphere 574.6
1847 Female, age 91, left hemisphere 565.9
Subiculum
nTPM: 853.5
1977 Female, age 85, both hemispheres 1199.6
2042 Male, age 76, both hemispheres 1055.5
2619 Male, age 74, both hemispheres 1011.0
2729 Female, age 91, right hemisphere 878.3
1901 Male, age 80, both hemispheres 758.0
2438 Female, age 94, left hemisphere 218.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 200.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 200.3
Samples: 255

Max nTPM: 1012.8
Min nTPM: 30.7
Std nTPM: 120.6
Median nTPM: 173.8
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 1012.8
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 692.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 612.5
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 520.0
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 512.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 511.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 490.2
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 483.2
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 452.0
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 450.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 432.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 129.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 129.2
FF:10169-103B7 60 years, female 131.8
FF:10153-102I9 76 years, female 126.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 73.0
Pig sample Sample description nTPM
Subiculum
nTPM: 38.6
Samples: 4

Max nTPM: 45.5
Min nTPM: 33.2
Sample A Female 45.5
Sample B Female 41.3
Sample C Male 34.4
Sample D Male 33.2
Dorsal hippocampus
nTPM: 73.1
Samples: 4

Max nTPM: 104.8
Min nTPM: 31.2
Sample A Female 104.8
Sample B Female 57.7
Sample C Male 98.5
Sample D Male 31.2
Entorhinal cortex
nTPM: 37.0
Samples: 4

Max nTPM: 45.1
Min nTPM: 33.0
Sample A Female 34.9
Sample B Female 45.1
Sample C Male 33.0
Sample D Male 34.9
Ventral hippocampus
nTPM: 53.1
Samples: 4

Max nTPM: 62.4
Min nTPM: 35.5
Sample A Female 60.0
Sample B Female 35.5
Sample C Male 54.6
Sample D Male 62.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 44.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 29.5
Samples: 4

Max nTPM: 42.8
Min nTPM: 14.7
Sample A Male 42.8
Sample B Male 30.5
Sample C Female 30.1
Sample D Female 14.7
Hippocampal formation
nTPM: 44.7
Samples: 4

Max nTPM: 59.3
Min nTPM: 36.6
Sample A Male 36.6
Sample B Male 38.0
Sample C Female 59.3
Sample D Female 44.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 10.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.8
1881 Antisense, RP_040604_01_D07, Mouse strain C57BL/6J (56 days, male) 10.8
1880 Antisense, RP_040604_01_D07, Mouse strain C57BL/6J (56 days, male) 6.5

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