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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
31.8
nTPM
HPA Brain:
28.0
nTPM
GTEx:
31.8
nTPM
FANTOM5:
26.5
Scaled Tags Per Million
Mouse:
71.3
nTPM
Allen mouse:
6.2
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
28.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 21.5
1870
Female, age 42, unknown
24.1
1833
Male, age 53, unknown
24.0
2828
Female, age 72, unknown
23.5
2411
Female, age 72, unknown
22.3
1830
Male, age 51, unknown
21.7
2019
Male, age 18, unknown
21.5
2666
Male, age 74, left hemisphere
21.2
1827
Male, age 72, unknown
20.6
2219
Male, age 76, both hemispheres
19.6
2586
Male, age 75, left hemisphere
16.1
Dorsal raphe nucleus nTPM: 22.4
2750
Male, age 76, both hemispheres
26.2
1828
Male, age 53, unknown
23.0
2047
Male, age 72, unknown
22.2
2298
Female, age 72, unknown
22.2
2016
Female, age 72, unknown
18.5
Inferior colliculus nTPM: 24.9
2097
Female, age 72, unknown
28.5
1848
Female, age 42, unknown
25.5
2849
Male, age 72, unknown
23.0
1890
Male, age 53, unknown
22.5
Median raphe nucleus nTPM: 28.0
2220
Male, age 76, midline
28.0
Periaquaductal grey, anterior nTPM: 21.1
1947
Male, age 18, unknown
22.8
2502
Female, age 75, unknown
21.4
1795
Male, age 51, unknown
19.0
Periaquaductal grey, dorsal nTPM: 22.5
2464
Female, age 72, unknown
23.6
2850
Male, age 76, both hemispheres
23.6
1840
Male, age 53, unknown
21.8
1831
Male, age 72, unknown
21.1
Periaquaductal grey, lateral nTPM: 22.3
2053
Male, age 18, unknown
25.1
2272
Male, age 74, both hemispheres
23.3
2140
Male, age 76, both hemispheres
18.6
Pretectal area nTPM: 24.2
1944
Female, age 72, unknown
27.3
1816
Male, age 51, unknown
27.2
1815
Male, age 53, unknown
26.6
1817
Female, age 42, unknown
26.0
2007
Male, age 72, unknown
25.4
2667
Female, age 75, unknown
23.4
2224
Female, age 72, unknown
23.1
2273
Male, age 74, both hemispheres
23.1
2407
Male, age 75, both hemispheres
23.0
2825
Male, age 18, unknown
21.4
2316
Male, age 76, right hemisphere
20.0
Red nucleus nTPM: 22.9
1821
Female, age 72, unknown
28.8
2823
Male, age 76, right hemisphere
26.2
1954
Female, age 42, unknown
24.6
2584
Male, age 75, left hemisphere
24.6
2503
Female, age 72, unknown
24.3
1904
Male, age 53, unknown
23.7
1865
Male, age 51, unknown
23.1
2785
Male, age 18, unknown
22.2
2725
Female, age 75, unknown
21.9
2769
Male, age 72, unknown
21.9
2227
Male, age 72, unknown
19.4
2588
Male, age 74, left hemisphere
14.7
Substantia nigra nTPM: 21.9
2241
Male, age 72, unknown
30.3
1889
Female, age 72, unknown
27.0
1916
Female, age 42, unknown
24.8
2590
Female, age 75, unknown
23.1
1851
Male, age 51, unknown
20.8
2583
Male, age 75, right hemisphere
20.6
2699
Male, age 18, unknown
20.1
1941
Male, age 53, unknown
19.7
2665
Male, age 74, both hemispheres
18.2
2409
Female, age 72, unknown
14.0
Superior colliculus nTPM: 23.3
1895
Male, age 76, right hemisphere
28.9
2587
Male, age 74, left hemisphere
26.6
1839
Male, age 51, unknown
25.5
2261
Male, age 18, unknown
23.0
1913
Female, age 42, unknown
22.9
1995
Male, age 72, unknown
22.6
2668
Female, age 75, unknown
22.4
1796
Male, age 53, unknown
21.5
2087
Female, age 72, unknown
21.4
2664
Male, age 75, both hemispheres
18.1
Ventral tegmental area nTPM: 22.3
2410
Female, age 72, unknown
26.0
2223
Female, age 72, unknown
24.4
2021
Male, age 53, unknown
22.0
2218
Male, age 76, both hemispheres
21.7
1915
Female, age 42, unknown
19.9
1942
Male, age 51, unknown
19.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
31.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 31.8
Samples: 139
Max nTPM: 62.6
Min nTPM: 16.9
Std nTPM: 7.1
Median nTPM: 31.3
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
62.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
54.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
48.5
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
45.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
45.2
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
45.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
44.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
43.9
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
43.2
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
42.1
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
42.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
41.8
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
41.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
40.7
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
40.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
39.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
39.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
39.9
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
39.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
39.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
39.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
39.2
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
39.2
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
38.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
38.8
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
38.5
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
37.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
37.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
37.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
36.4
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
35.7
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
35.6
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
35.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
35.1
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
35.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
34.9
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
34.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
34.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
34.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
34.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
34.1
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
34.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
34.1
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
34.0
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
34.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
33.9
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
33.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
33.5
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
33.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
33.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
33.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
33.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
32.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
32.8
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
32.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
32.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
32.5
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
32.4
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
32.3
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
32.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
32.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
32.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
31.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
31.9
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
31.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
31.7
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
31.4
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
31.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
31.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
31.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
31.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
31.0
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
31.0
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
30.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
30.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
30.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
30.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
30.6
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
30.5
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
30.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
30.4
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
30.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
30.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
30.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
30.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
30.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
29.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
29.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
29.8
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
29.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
29.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
29.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
28.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
28.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
28.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
28.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
27.9
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
27.8
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
27.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
27.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
27.5
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
27.3
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
27.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
27.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
27.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
26.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
26.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
26.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
26.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
25.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
25.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
25.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
25.6
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
25.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
25.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
25.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
25.0
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
24.7
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
24.6
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
24.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
24.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
24.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
24.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
24.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
23.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
23.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
23.6
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
22.8
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
22.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
22.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
22.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
21.8
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
21.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
20.2
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
19.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
19.6
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
18.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
18.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
16.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
71.3
Mouse sample
Sample description
nTPM
Midbrain nTPM: 71.4
Samples: 4
Max nTPM: 76.0
Min nTPM: 66.7
Sample A
Male
74.8
Sample B
Male
76.0
Sample C
Female
67.9
Sample D
Female
66.7
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.