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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1.1
nTPM
HPA Brain:
21.3
nTPM
GTEx:
1.1
nTPM
FANTOM5:
0.1
Scaled Tags Per Million
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
21.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 17.6
2586
Male, age 75, left hemisphere
28.2
1830
Male, age 51, unknown
18.1
1833
Male, age 53, unknown
17.6
1827
Male, age 72, unknown
16.7
2411
Female, age 72, unknown
16.5
2666
Male, age 74, left hemisphere
16.4
2019
Male, age 18, unknown
16.0
2828
Female, age 72, unknown
16.0
2219
Male, age 76, both hemispheres
15.4
1870
Female, age 42, unknown
15.2
Dorsal raphe nucleus nTPM: 16.4
2047
Male, age 72, unknown
18.7
2750
Male, age 76, both hemispheres
17.5
2016
Female, age 72, unknown
17.4
1828
Male, age 53, unknown
15.6
2298
Female, age 72, unknown
13.0
Inferior colliculus nTPM: 18.1
1890
Male, age 53, unknown
18.8
2849
Male, age 72, unknown
18.6
1848
Female, age 42, unknown
18.4
2097
Female, age 72, unknown
16.4
Median raphe nucleus nTPM: 17.0
2220
Male, age 76, midline
17.0
Periaquaductal grey, anterior nTPM: 17.1
1947
Male, age 18, unknown
20.7
1795
Male, age 51, unknown
16.0
2502
Female, age 75, unknown
14.7
Periaquaductal grey, dorsal nTPM: 21.3
2850
Male, age 76, both hemispheres
26.0
1831
Male, age 72, unknown
20.7
1840
Male, age 53, unknown
19.9
2464
Female, age 72, unknown
18.7
Periaquaductal grey, lateral nTPM: 20.0
2140
Male, age 76, both hemispheres
24.7
2053
Male, age 18, unknown
18.8
2272
Male, age 74, both hemispheres
16.4
Pretectal area nTPM: 16.6
2407
Male, age 75, both hemispheres
19.7
2825
Male, age 18, unknown
18.6
2667
Female, age 75, unknown
18.4
2316
Male, age 76, right hemisphere
17.7
1944
Female, age 72, unknown
17.1
2273
Male, age 74, both hemispheres
17.0
1816
Male, age 51, unknown
16.5
2224
Female, age 72, unknown
16.3
1815
Male, age 53, unknown
14.4
2007
Male, age 72, unknown
14.4
1817
Female, age 42, unknown
13.0
Red nucleus nTPM: 16.1
1865
Male, age 51, unknown
18.3
2584
Male, age 75, left hemisphere
17.7
2725
Female, age 75, unknown
17.4
1904
Male, age 53, unknown
17.3
1954
Female, age 42, unknown
17.3
2823
Male, age 76, right hemisphere
16.6
2769
Male, age 72, unknown
15.6
2785
Male, age 18, unknown
15.5
2227
Male, age 72, unknown
14.7
2588
Male, age 74, left hemisphere
14.4
2503
Female, age 72, unknown
14.0
1821
Female, age 72, unknown
13.7
Substantia nigra nTPM: 16.5
2409
Female, age 72, unknown
21.7
2241
Male, age 72, unknown
19.7
2590
Female, age 75, unknown
18.0
2583
Male, age 75, right hemisphere
17.0
1941
Male, age 53, unknown
16.7
1889
Female, age 72, unknown
15.6
2699
Male, age 18, unknown
14.8
2665
Male, age 74, both hemispheres
14.1
1851
Male, age 51, unknown
14.0
1916
Female, age 42, unknown
13.3
Superior colliculus nTPM: 16.9
2664
Male, age 75, both hemispheres
20.5
1895
Male, age 76, right hemisphere
19.0
1913
Female, age 42, unknown
17.7
2087
Female, age 72, unknown
17.2
1839
Male, age 51, unknown
16.8
1796
Male, age 53, unknown
16.2
1995
Male, age 72, unknown
16.0
2261
Male, age 18, unknown
15.8
2587
Male, age 74, left hemisphere
15.7
2668
Female, age 75, unknown
14.6
Ventral tegmental area nTPM: 16.2
2021
Male, age 53, unknown
18.2
2218
Male, age 76, both hemispheres
18.1
1942
Male, age 51, unknown
16.8
2223
Female, age 72, unknown
15.1
2410
Female, age 72, unknown
15.1
1915
Female, age 42, unknown
13.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1.1
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 1.1
Samples: 139
Max nTPM: 12.4
Min nTPM: 0.0
Std nTPM: 1.7
Median nTPM: 0.4
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
12.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
7.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
7.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
6.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
6.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
5.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
4.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
4.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
3.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
3.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
3.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
3.2
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
3.2
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
3.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
3.0
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
2.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
2.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
2.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
2.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
2.3
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
1.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
1.7
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
1.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
1.7
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
1.6
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
1.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
1.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
1.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
1.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
1.2
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
1.2
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
1.2
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
1.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
1.2
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
1.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
1.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
1.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
1.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
1.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
0.9
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
0.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
0.9
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
0.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
0.9
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
0.8
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
0.8
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
0.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
0.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
0.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
0.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
0.7
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
0.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
0.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
0.7
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
0.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
0.6
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
0.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
0.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
0.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
0.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
0.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
0.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
0.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
0.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
0.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
0.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
0.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
0.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
0.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
0.4
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
0.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
0.4
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
0.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
0.3
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
0.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
0.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
0.3
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
0.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
0.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
0.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
0.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
0.3
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
0.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
0.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
0.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
0.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
0.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
0.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
0.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
0.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
0.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
0.2
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
0.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
0.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
0.2
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
0.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
0.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
0.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
0.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
0.2
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
0.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
0.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
0.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
0.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
0.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
0.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
0.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
0.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
0.1
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
0.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
0.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
0.1
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
0.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
0.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
0.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
0.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
0.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
0.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
0.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
0.0
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
0.0
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
0.0
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
0.0
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
0.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
0.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
0.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
0.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
0.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
0.0
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
0.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
0.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
0.0
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
0.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
0.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
0.0
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
0.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
0.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.