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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
107.9
nTPM
HPA Brain:
68.6
nTPM
GTEx:
107.9
nTPM
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
68.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 58.0
2019
Male, age 18, unknown
66.7
1827
Male, age 72, unknown
66.2
2586
Male, age 75, left hemisphere
64.1
2828
Female, age 72, unknown
64.1
2411
Female, age 72, unknown
63.1
1870
Female, age 42, unknown
59.7
1833
Male, age 53, unknown
55.9
1830
Male, age 51, unknown
48.4
2666
Male, age 74, left hemisphere
47.0
2219
Male, age 76, both hemispheres
44.7
Dorsal raphe nucleus nTPM: 67.4
2298
Female, age 72, unknown
87.6
2047
Male, age 72, unknown
73.5
1828
Male, age 53, unknown
64.5
2750
Male, age 76, both hemispheres
58.9
2016
Female, age 72, unknown
52.7
Inferior colliculus nTPM: 53.1
1890
Male, age 53, unknown
59.6
2097
Female, age 72, unknown
58.8
1848
Female, age 42, unknown
53.6
2849
Male, age 72, unknown
40.3
Median raphe nucleus nTPM: 58.9
2220
Male, age 76, midline
58.9
Periaquaductal grey, anterior nTPM: 62.9
1795
Male, age 51, unknown
69.8
1947
Male, age 18, unknown
61.6
2502
Female, age 75, unknown
57.4
Periaquaductal grey, dorsal nTPM: 47.9
1831
Male, age 72, unknown
49.5
2850
Male, age 76, both hemispheres
47.9
2464
Female, age 72, unknown
47.4
1840
Male, age 53, unknown
46.8
Periaquaductal grey, lateral nTPM: 50.7
2272
Male, age 74, both hemispheres
57.2
2053
Male, age 18, unknown
52.9
2140
Male, age 76, both hemispheres
42.1
Pretectal area nTPM: 64.1
2007
Male, age 72, unknown
78.7
1817
Female, age 42, unknown
75.7
1816
Male, age 51, unknown
74.6
1944
Female, age 72, unknown
71.4
2667
Female, age 75, unknown
69.6
1815
Male, age 53, unknown
63.8
2273
Male, age 74, both hemispheres
61.4
2316
Male, age 76, right hemisphere
56.7
2224
Female, age 72, unknown
54.3
2407
Male, age 75, both hemispheres
51.6
2825
Male, age 18, unknown
47.1
Red nucleus nTPM: 63.3
1821
Female, age 72, unknown
77.5
2503
Female, age 72, unknown
70.2
2785
Male, age 18, unknown
68.2
2227
Male, age 72, unknown
64.2
1954
Female, age 42, unknown
64.0
2823
Male, age 76, right hemisphere
62.8
2769
Male, age 72, unknown
61.8
2725
Female, age 75, unknown
61.2
2588
Male, age 74, left hemisphere
60.7
1865
Male, age 51, unknown
59.5
1904
Male, age 53, unknown
56.2
2584
Male, age 75, left hemisphere
52.8
Substantia nigra nTPM: 68.6
1916
Female, age 42, unknown
91.2
1889
Female, age 72, unknown
80.7
1851
Male, age 51, unknown
72.7
2590
Female, age 75, unknown
70.2
1941
Male, age 53, unknown
68.3
2409
Female, age 72, unknown
64.2
2241
Male, age 72, unknown
61.2
2699
Male, age 18, unknown
60.4
2665
Male, age 74, both hemispheres
59.4
2583
Male, age 75, right hemisphere
57.7
Superior colliculus nTPM: 57.7
1796
Male, age 53, unknown
69.7
2261
Male, age 18, unknown
66.4
2087
Female, age 72, unknown
64.3
2587
Male, age 74, left hemisphere
59.6
2668
Female, age 75, unknown
56.7
1913
Female, age 42, unknown
54.1
1839
Male, age 51, unknown
53.3
1895
Male, age 76, right hemisphere
53.0
1995
Male, age 72, unknown
50.3
2664
Male, age 75, both hemispheres
49.1
Ventral tegmental area nTPM: 63.1
1915
Female, age 42, unknown
76.7
2410
Female, age 72, unknown
66.7
2218
Male, age 76, both hemispheres
63.0
1942
Male, age 51, unknown
60.2
2223
Female, age 72, unknown
57.8
2021
Male, age 53, unknown
54.4
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
107.9
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 107.9
Samples: 139
Max nTPM: 219.2
Min nTPM: 52.8
Std nTPM: 28.9
Median nTPM: 104.2
The Human Protein Atlas project is funded
