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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
292.1
nTPM
Monaco:
186.5
nTPM
Schmiedel:
128.7
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
292.1
HPA sample
nTPM
gdT-cell nTPM: 185.1
Samples: 6
Max nTPM: 267.4
Min nTPM: 133.4
P10809_1007
133.4
P10809_1022
196.8
P10809_1041
267.4
P10809_1060
166.5
P10809_1077
172.0
P10809_1098
174.5
MAIT T-cell nTPM: 157.5
Samples: 6
Max nTPM: 202.8
Min nTPM: 115.2
P10809_1006
115.2
P10809_1024
202.8
P10809_1043
185.8
P10809_1062
179.7
P10809_1083
117.6
P10809_1097
144.1
Memory CD4 T-cell nTPM: 159.5
Samples: 6
Max nTPM: 203.0
Min nTPM: 136.2
P10809_1014
136.2
P10809_1026
138.9
P10809_1045
203.0
P10809_1064
162.9
P10809_1086
149.2
P10809_1113
166.6
Memory CD8 T-cell nTPM: 178.6
Samples: 5
Max nTPM: 198.6
Min nTPM: 162.3
P10809_1012
163.0
P10809_1027
197.1
P10809_1046
198.6
P10809_1065
162.3
P10809_1111
171.8
Naive CD4 T-cell nTPM: 129.6
Samples: 6
Max nTPM: 178.2
Min nTPM: 91.3
P10809_1015
91.3
P10809_1030
136.1
P10809_1049
178.2
P10809_1068
122.1
P10809_1085
124.5
P10809_1112
125.3
Naive CD8 T-cell nTPM: 127.3
Samples: 6
Max nTPM: 150.9
Min nTPM: 106.1
P10809_1016
106.1
P10809_1031
125.1
P10809_1050
119.9
P10809_1069
142.8
P10809_1087
150.9
P10809_1110
119.2
T-reg nTPM: 292.1
Samples: 6
Max nTPM: 340.6
Min nTPM: 226.8
P10809_1018
226.8
P10809_1037
299.5
P10809_1056
339.0
P10809_1075
250.2
P10809_1094
296.7
P10809_1106
340.6
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
186.5
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 137.8
Samples: 4
Max nTPM: 183.2
Min nTPM: 109.1
RHH5202_R3573
140.2
RHH5230_R3602
118.8
RHH5259_R3631
109.1
RHH5288_R3660
183.2
Effector memory CD8 T-cell nTPM: 169.8
Samples: 4
Max nTPM: 233.7
Min nTPM: 107.7
RHH5203_R3574
233.7
RHH5231_R3603
177.2
RHH5260_R3632
107.7
RHH5289_R3661
160.6
MAIT T-cell nTPM: 131.8
Samples: 4
Max nTPM: 176.0
Min nTPM: 94.0
RHH5233_R3605
148.4
RHH5205_R3576
94.0
RHH5262_R3634
108.9
RHH5297_R3663
176.0
Memory CD4 T-cell TFH nTPM: 173.0
Samples: 4
Max nTPM: 212.6
Min nTPM: 115.1
RHH5300_R3666
157.6
RHH5236_R3608
206.7
RHH5265_R3637
115.1
RHH5208_R3579
212.6
Memory CD4 T-cell Th1 nTPM: 142.3
Samples: 4
Max nTPM: 245.5
Min nTPM: 92.5
RHH5210_R3581
124.2
RHH5302_R3668
245.5
RHH5238_R3610
106.8
RHH5267_R3639
92.5
Memory CD4 T-cell Th1/Th17 nTPM: 147.9
Samples: 4
Max nTPM: 240.7
Min nTPM: 66.6
RHH5303_R3669
240.7
RHH5211_R3582
179.7
RHH5239_R3611
66.6
RHH5268_R3640
104.7
Memory CD4 T-cell Th17 nTPM: 107.1
Samples: 4
Max nTPM: 156.2
Min nTPM: 69.1
RHH5304_R3670
124.7
RHH5212_R3583
156.2
RHH5240_R3612
69.1
RHH5269_R3641
78.2
Memory CD4 T-cell Th2 nTPM: 151.6
Samples: 4
Max nTPM: 181.1
Min nTPM: 101.8
RHH5305_R3671
181.1
RHH5213_R3584
148.2
RHH5241_R3613
175.4
RHH5270_R3642
101.8
Naive CD4 T-cell nTPM: 108.2
Samples: 4
Max nTPM: 146.1
Min nTPM: 74.9
RHH5306_R3672
118.7
RHH5214_R3585
146.1
RHH5242_R3614
93.2
RHH5271_R3643
74.9
Naive CD8 T-cell nTPM: 95.3
Samples: 4
Max nTPM: 145.4
Min nTPM: 54.9
RHH5201_R3572
101.1
RHH5229_R3601
54.9
RHH5258_R3630
145.4
RHH5287_R3659
79.9
Non-Vd2 gdTCR nTPM: 165.7
Samples: 4
Max nTPM: 217.5
Min nTPM: 107.9
RHH5235_R3607
107.9
RHH5264_R3636
186.5
RHH5207_R3578
150.8
RHH5299_R3665
217.5
T-reg nTPM: 151.5
Samples: 4
Max nTPM: 215.2
Min nTPM: 83.6
RHH5301_R3667
185.3
RHH5237_R3609
215.2
RHH5266_R3638
83.6
RHH5209_R3580
121.8
Terminal effector memory CD4 T-cell nTPM: 119.7
Samples: 2
Max nTPM: 147.2
Min nTPM: 92.1
RHH5243_R3615
92.1
RHH5272_R3644
147.2
Terminal effector memory CD8 T-cell nTPM: 186.5
Samples: 4
Max nTPM: 226.5
Min nTPM: 137.1
RHH5232_R3604
170.5
RHH5204_R3575
226.5
RHH5261_R3633
137.1
RHH5296_R3662
211.8
Vd2 gdTCR nTPM: 179.0
Samples: 4
Max nTPM: 235.6
Min nTPM: 104.6
RHH5234_R3606
163.6
RHH5206_R3577
235.6
RHH5263_R3635
104.6
RHH5298_R3664
212.0
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
