MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:55.1 nTPM
HPA Brain:91.9 nTPM
GTEx:55.1 nTPM
FANTOM5:116.5 Scaled Tags Per Million
Pig:45.9 nTPM
Mouse:83.1 nTPM
Allen mouse:4.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 91.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 86.0
1870 Female, age 42, unknown 94.4
2828 Female, age 72, unknown 93.4
2586 Male, age 75, left hemisphere 89.8
1827 Male, age 72, unknown 87.8
1830 Male, age 51, unknown 86.8
2411 Female, age 72, unknown 86.5
1833 Male, age 53, unknown 83.6
2019 Male, age 18, unknown 82.8
2666 Male, age 74, left hemisphere 79.7
2219 Male, age 76, both hemispheres 75.3
Dorsal raphe nucleus
nTPM: 82.4
2750 Male, age 76, both hemispheres 88.3
2016 Female, age 72, unknown 83.4
2298 Female, age 72, unknown 80.9
1828 Male, age 53, unknown 80.1
2047 Male, age 72, unknown 79.3
Inferior colliculus
nTPM: 78.5
2849 Male, age 72, unknown 83.5
1848 Female, age 42, unknown 78.6
1890 Male, age 53, unknown 78.3
2097 Female, age 72, unknown 73.7
Median raphe nucleus
nTPM: 81.7
2220 Male, age 76, midline 81.7
Periaquaductal grey, anterior
nTPM: 85.5
1947 Male, age 18, unknown 94.4
2502 Female, age 75, unknown 84.7
1795 Male, age 51, unknown 77.4
Periaquaductal grey, dorsal
nTPM: 74.4
2850 Male, age 76, both hemispheres 81.3
1831 Male, age 72, unknown 74.8
2464 Female, age 72, unknown 71.4
1840 Male, age 53, unknown 70.1
Periaquaductal grey, lateral
nTPM: 82.4
2272 Male, age 74, both hemispheres 88.0
2053 Male, age 18, unknown 82.2
2140 Male, age 76, both hemispheres 77.2
Pretectal area
nTPM: 82.8
1815 Male, age 53, unknown 91.1
1817 Female, age 42, unknown 90.9
2007 Male, age 72, unknown 88.5
2273 Male, age 74, both hemispheres 87.1
2407 Male, age 75, both hemispheres 86.4
1944 Female, age 72, unknown 84.2
2667 Female, age 75, unknown 81.8
1816 Male, age 51, unknown 80.0
2825 Male, age 18, unknown 76.6
2224 Female, age 72, unknown 74.5
2316 Male, age 76, right hemisphere 69.4
Red nucleus
nTPM: 91.9
1865 Male, age 51, unknown 108.0
1904 Male, age 53, unknown 104.1
2503 Female, age 72, unknown 101.3
2769 Male, age 72, unknown 95.8
2227 Male, age 72, unknown 95.5
1821 Female, age 72, unknown 93.3
1954 Female, age 42, unknown 91.3
2785 Male, age 18, unknown 88.5
2823 Male, age 76, right hemisphere 84.5
2725 Female, age 75, unknown 83.3
2584 Male, age 75, left hemisphere 82.4
2588 Male, age 74, left hemisphere 75.2
Substantia nigra
nTPM: 83.5
2583 Male, age 75, right hemisphere 102.8
1889 Female, age 72, unknown 91.2
2699 Male, age 18, unknown 90.8
2409 Female, age 72, unknown 87.9
2590 Female, age 75, unknown 84.5
1851 Male, age 51, unknown 83.4
1916 Female, age 42, unknown 82.2
1941 Male, age 53, unknown 79.4
2665 Male, age 74, both hemispheres 74.8
2241 Male, age 72, unknown 58.5
Superior colliculus
nTPM: 82.5
1913 Female, age 42, unknown 103.0
1995 Male, age 72, unknown 93.4
2668 Female, age 75, unknown 89.5
1796 Male, age 53, unknown 81.7
1895 Male, age 76, right hemisphere 79.3
2587 Male, age 74, left hemisphere 79.0
2261 Male, age 18, unknown 78.0
2087 Female, age 72, unknown 77.9
1839 Male, age 51, unknown 74.0
2664 Male, age 75, both hemispheres 68.8
Ventral tegmental area
nTPM: 85.5
2218 Male, age 76, both hemispheres 91.5
1942 Male, age 51, unknown 89.1
2410 Female, age 72, unknown 88.7
2223 Female, age 72, unknown 85.0
2021 Male, age 53, unknown 79.5
1915 Female, age 42, unknown 79.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 55.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 55.1
Samples: 139

Max nTPM: 91.6
Min nTPM: 32.6
Std nTPM: 10.0
Median nTPM: 54.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 91.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 88.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 85.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 77.9
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 75.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 74.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 73.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 69.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 69.5
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 69.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 68.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 116.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 116.5
FF:10158-103A5 76 years, female 116.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 45.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 41.4
Samples: 4

Max nTPM: 48.6
Min nTPM: 33.0
Sample A Female 48.6
Sample B Female 33.0
Sample C Male 38.5
Sample D Male 45.3
Midbrain
nTPM: 46.0
Samples: 4

Max nTPM: 63.3
Min nTPM: 37.2
Sample A Female 63.3
Sample B Female 38.1
Sample C Male 45.2
Sample D Male 37.2
Periaqueductal gray
nTPM: 34.7
Samples: 3

Max nTPM: 36.0
Min nTPM: 32.3
Sample B Female 36.0
Sample C Male 35.8
Sample D Male 32.3
Superior colliculi
nTPM: 43.4
Samples: 4

Max nTPM: 48.7
Min nTPM: 37.5
Sample A Female 48.7
Sample B Female 37.5
Sample C Male 44.3
Sample D Male 43.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 83.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 83.1
Samples: 4

Max nTPM: 88.8
Min nTPM: 77.1
Sample A Male 88.8
Sample B Male 84.5
Sample C Female 77.1
Sample D Female 81.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.6
74357658 Antisense, RP_060119_03_B12, Mouse strain C57BL/6J (56 days, male) 4.6

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