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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
38.0
nTPM
Monaco:
72.0
nTPM
Schmiedel:
46.1
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.0
HPA sample
nTPM
gdT-cell nTPM: 33.2
Samples: 6
Max nTPM: 42.2
Min nTPM: 23.1
P10809_1007
27.7
P10809_1022
42.2
P10809_1041
36.1
P10809_1060
23.1
P10809_1077
35.6
P10809_1098
34.2
MAIT T-cell nTPM: 34.5
Samples: 6
Max nTPM: 46.7
Min nTPM: 26.4
P10809_1006
27.1
P10809_1024
46.7
P10809_1043
26.4
P10809_1062
30.6
P10809_1083
36.7
P10809_1097
39.3
Memory CD4 T-cell nTPM: 24.9
Samples: 6
Max nTPM: 30.5
Min nTPM: 21.3
P10809_1014
25.0
P10809_1026
21.3
P10809_1045
30.5
P10809_1064
24.3
P10809_1086
23.4
P10809_1113
24.8
Memory CD8 T-cell nTPM: 33.8
Samples: 5
Max nTPM: 38.1
Min nTPM: 29.6
P10809_1012
33.1
P10809_1027
38.1
P10809_1046
37.1
P10809_1065
29.6
P10809_1111
31.1
Naive CD4 T-cell nTPM: 28.2
Samples: 6
Max nTPM: 41.6
Min nTPM: 20.6
P10809_1015
20.6
P10809_1030
22.0
P10809_1049
41.6
P10809_1068
30.0
P10809_1085
25.9
P10809_1112
29.2
Naive CD8 T-cell nTPM: 27.7
Samples: 6
Max nTPM: 30.3
Min nTPM: 25.3
P10809_1016
25.3
P10809_1031
26.6
P10809_1050
28.0
P10809_1069
30.3
P10809_1087
27.4
P10809_1110
28.3
T-reg nTPM: 38.0
Samples: 6
Max nTPM: 59.1
Min nTPM: 24.5
P10809_1018
24.5
P10809_1037
38.3
P10809_1056
33.1
P10809_1075
39.7
P10809_1094
59.1
P10809_1106
33.2
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
72.0
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 55.3
Samples: 4
Max nTPM: 64.9
Min nTPM: 41.7
RHH5202_R3573
64.9
RHH5230_R3602
56.3
RHH5259_R3631
58.1
RHH5288_R3660
41.7
Effector memory CD8 T-cell nTPM: 65.9
Samples: 4
Max nTPM: 75.8
Min nTPM: 46.3
RHH5203_R3574
75.8
RHH5231_R3603
46.3
RHH5260_R3632
68.7
RHH5289_R3661
72.6
MAIT T-cell nTPM: 58.7
Samples: 4
Max nTPM: 76.7
Min nTPM: 51.3
RHH5233_R3605
51.3
RHH5205_R3576
76.7
RHH5262_R3634
55.1
RHH5297_R3663
51.5
Memory CD4 T-cell TFH nTPM: 50.3
Samples: 4
Max nTPM: 59.4
Min nTPM: 46.0
RHH5300_R3666
46.0
RHH5236_R3608
46.5
RHH5265_R3637
49.2
RHH5208_R3579
59.4
Memory CD4 T-cell Th1 nTPM: 46.7
Samples: 4
Max nTPM: 52.0
Min nTPM: 38.6
RHH5210_R3581
52.0
RHH5302_R3668
38.6
RHH5238_R3610
46.2
RHH5267_R3639
50.1
Memory CD4 T-cell Th1/Th17 nTPM: 58.7
Samples: 4
Max nTPM: 70.0
Min nTPM: 46.1
RHH5303_R3669
52.8
RHH5211_R3582
66.0
RHH5239_R3611
70.0
RHH5268_R3640
46.1
Memory CD4 T-cell Th17 nTPM: 53.0
Samples: 4
Max nTPM: 60.5
Min nTPM: 46.0
RHH5304_R3670
59.0
RHH5212_R3583
46.0
RHH5240_R3612
60.5
RHH5269_R3641
46.4
Memory CD4 T-cell Th2 nTPM: 58.8
Samples: 4
Max nTPM: 80.3
Min nTPM: 43.9
RHH5305_R3671
46.9
RHH5213_R3584
80.3
RHH5241_R3613
64.1
RHH5270_R3642
43.9
Naive CD4 T-cell nTPM: 52.2
Samples: 4
Max nTPM: 67.5
Min nTPM: 40.1
RHH5306_R3672
40.1
RHH5214_R3585
46.2
RHH5242_R3614
55.1
RHH5271_R3643
67.5
Naive CD8 T-cell nTPM: 45.2
Samples: 4
Max nTPM: 58.1
Min nTPM: 31.0
RHH5201_R3572
58.1
RHH5229_R3601
38.5
RHH5258_R3630
53.2
RHH5287_R3659
31.0
Non-Vd2 gdTCR nTPM: 62.1
Samples: 4
Max nTPM: 74.0
Min nTPM: 44.4
RHH5235_R3607
74.0
RHH5264_R3636
44.4
RHH5207_R3578
66.1
RHH5299_R3665
63.8
T-reg nTPM: 48.8
Samples: 4
Max nTPM: 72.9
Min nTPM: 35.3
RHH5301_R3667
35.3
RHH5237_R3609
72.9
RHH5266_R3638
39.9
RHH5209_R3580
46.9
Terminal effector memory CD4 T-cell nTPM: 62.2
Samples: 2
Max nTPM: 79.5
Min nTPM: 44.8
RHH5243_R3615
79.5
RHH5272_R3644
44.8
Terminal effector memory CD8 T-cell nTPM: 72.0
Samples: 4
Max nTPM: 84.0
Min nTPM: 56.1
RHH5232_R3604
74.1
RHH5204_R3575
56.1
RHH5261_R3633
84.0
RHH5296_R3662
73.6
Vd2 gdTCR nTPM: 68.8
Samples: 4
Max nTPM: 85.7
Min nTPM: 42.9
RHH5234_R3606
85.7
RHH5206_R3577
67.8
RHH5263_R3635
78.9
RHH5298_R3664
42.9
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
