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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:77.3 nTPM
GTEx:77.3 nTPM
FANTOM5:9.2 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA044165Antibody HPA073122
Squamous epithelial cells MediumHigh




VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

77.3
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 77.3
Samples: 170

Max nTPM: 392.7
Min nTPM: 0.0
Std nTPM: 74.3
Median nTPM: 62.1
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 392.7
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 347.5
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 289.0
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 231.3
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 224.2
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 217.4
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 214.7
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 214.2
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 201.2
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 197.0
GTEX-11I78-2026-SM-5987C 50-59 years, female 193.1
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 185.3
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 182.9
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 181.3
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 181.1
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 179.0
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 172.1
GTEX-S341-1226-SM-4AD5S 40-49 years, female 171.4
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 167.2
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 165.3
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 164.5
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 162.4
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 157.0
GTEX-14PKU-1326-SM-6871B 40-49 years, female 156.1
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 154.8
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 154.5
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 154.4
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 151.3
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 150.5
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 150.0
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 145.6
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 144.8
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 143.5
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 142.0
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 140.9
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 137.7
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 136.6
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 136.3
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 136.3
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 131.7
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 130.4
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 129.7
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 129.0
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 128.0
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 127.0
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 125.1
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 124.9
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 121.5
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 121.5
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 117.2
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 116.9
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 116.8
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 115.8
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 115.7
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 115.3
GTEX-1C475-0526-SM-793AC 40-49 years, female 114.7
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 113.0
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 108.4
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 106.0
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 103.4
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 101.7
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 99.3
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 98.1
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 97.0
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 96.3
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 95.8
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 95.8
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 93.4
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 92.5
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 89.9
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 86.8
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 86.8
GTEX-16NPV-2526-SM-6M483 50-59 years, female 84.5
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 84.3
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 83.0
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 80.7
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 80.7
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 76.4
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 75.5
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 73.8
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 69.4
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 69.0
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 66.0
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 64.8
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 62.1
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 62.0
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 60.3
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 60.1
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 59.8
GTEX-QCQG-1226-SM-48U23 50-59 years, female 57.8
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 54.7
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 53.9
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 53.1
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 52.4
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 48.9
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 48.4
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 48.1
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 46.3
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 45.0
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 37.6
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 36.2
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 36.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 35.7
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 33.8
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 31.4
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 30.2
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 27.1
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 24.8
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 24.6
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 23.7
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 22.0
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 21.9
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 20.8
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 20.1
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 17.6
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 14.6
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 14.4
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 14.3
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 13.8
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 12.8
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 11.2
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 9.7
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 9.6
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 9.3
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 8.8
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 8.5
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 8.1
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 7.0
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 6.3
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 6.3
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 6.1
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 5.7
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 5.0
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 4.0
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 3.4
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 3.3
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 3.0
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 2.5
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1.5
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 1.4
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 1.3
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1.3
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 1.0
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 0.9
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 0.7
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 0.6
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 0.5
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 0.4
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 0.3
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 0.3
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 0.3
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 0.3
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 0.2
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 0.2
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 0.2
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 0.2
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 0.1
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 0.1
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 0.1
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 0.0
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 0.0
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 0.0
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 0.0
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 0.0
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 0.0
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 0.0
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 0.0
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 0.0
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 0.0
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 0.0
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

9.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 9.2
FF:10204-103F6 68 years, female 9.2

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