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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Medium
Enterocytes: Medium
Enterocytes - Microvilli: High
Goblet cells: Medium
Paneth cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:2706.4 nTPM
HPA:2596.2 nTPM
GTEx:2706.4 nTPM
FANTOM5:3846.5 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA041602Antibody CAB020769
Endocrine cells Medium-
Enterocytes Medium-
Enterocytes - Microvilli High-
Glandular cells -Medium
Goblet cells Medium-
Paneth cells Not detected-





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2596.2
overview
Male, age 65
Small intestine sample 232
nTPM: 2802.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 3309.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 2188.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 2084.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2706.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 2706.4
Samples: 207

Max nTPM: 5114.9
Min nTPM: 1319.4
Std nTPM: 877.0
Median nTPM: 2570.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 5114.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 5095.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 5021.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 4983.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 4904.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 4814.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 4788.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 4728.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 4708.6
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 4702.5
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 4562.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 4319.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 4305.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 4146.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 4140.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 4111.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 4096.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 4019.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 3973.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 3923.9
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 3920.7
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 3885.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 3846.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 3840.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 3832.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 3815.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 3811.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 3770.6
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 3739.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 3717.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 3698.1
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 3674.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 3607.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 3587.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 3532.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 3529.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 3528.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 3518.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 3508.3
GTEX-1192X-2526-SM-59868 50-59 years, male 3497.5
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 3491.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 3485.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 3454.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 3418.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 3364.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 3333.3
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 3315.8
GTEX-14PKU-1626-SM-6871C 40-49 years, female 3315.0
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 3297.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 3292.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 3289.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 3272.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 3243.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 3228.8
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 3221.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 3190.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 3174.4
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 3121.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 3102.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 3097.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 3087.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 3082.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 3046.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 3030.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 3005.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 3004.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 3001.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 2971.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 2947.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 2930.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 2924.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 2903.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 2901.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 2900.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 2899.2
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 2884.8
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 2863.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 2858.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 2855.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 2839.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 2829.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 2823.0
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 2816.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 2813.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 2812.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 2780.8
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 2778.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 2768.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 2759.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 2738.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 2738.4
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 2738.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 2714.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 2708.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 2694.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 2660.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 2655.0
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 2649.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 2635.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 2628.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 2624.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 2623.2
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 2577.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 2570.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 2544.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 2543.4
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 2532.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 2504.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 2449.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 2449.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 2438.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 2436.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 2434.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 2423.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 2411.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 2404.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 2398.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 2387.2
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 2371.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 2363.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 2362.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 2360.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 2340.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 2340.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 2316.6
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 2312.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 2296.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 2293.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 2277.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 2256.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 2250.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 2234.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 2230.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 2224.2
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 2210.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 2208.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 2206.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 2201.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 2189.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 2175.7
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 2146.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 2143.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 2136.3
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 2135.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 2118.6
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 2111.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 2108.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 2082.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 2080.9
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 2065.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 2051.9
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 2043.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 2022.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 2019.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 2014.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 2008.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 2005.8
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 1998.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1987.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1971.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1969.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1968.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1966.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1960.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1939.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1928.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1918.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1917.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1914.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1910.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1897.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1895.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1877.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1875.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1872.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1871.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1862.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1841.4
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 1828.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1792.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1783.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1775.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1756.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1742.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 1733.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1702.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1698.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1664.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1640.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1633.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1632.7
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 1622.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1620.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1615.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1611.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1608.4
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 1602.4
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1516.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1513.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1480.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1474.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1414.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1333.1
GTEX-178AV-1226-SM-GOR11 40-49 years, male 1330.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1326.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1324.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1319.4
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

3846.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 3846.5
FF:10024-101D6 15,40,85 years, mixed 3846.5

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