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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
42.2
nTPM
HPA Brain:
89.3
nTPM
GTEx:
42.2
nTPM
FANTOM5:
118.0
Scaled Tags Per Million
Pig:
153.8
nTPM
Mouse:
171.2
nTPM
Allen mouse:
10.1
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
89.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 67.4
2666
Male, age 74, left hemisphere
72.8
1833
Male, age 53, unknown
72.2
2586
Male, age 75, left hemisphere
69.4
1830
Male, age 51, unknown
69.3
2411
Female, age 72, unknown
67.7
1870
Female, age 42, unknown
67.2
2019
Male, age 18, unknown
66.4
1827
Male, age 72, unknown
66.2
2219
Male, age 76, both hemispheres
64.3
2828
Female, age 72, unknown
58.4
Dorsal raphe nucleus nTPM: 63.8
2750
Male, age 76, both hemispheres
75.4
2298
Female, age 72, unknown
65.3
1828
Male, age 53, unknown
60.3
2047
Male, age 72, unknown
60.0
2016
Female, age 72, unknown
57.8
Inferior colliculus nTPM: 62.2
2097
Female, age 72, unknown
72.5
1890
Male, age 53, unknown
62.7
1848
Female, age 42, unknown
58.8
2849
Male, age 72, unknown
55.0
Median raphe nucleus nTPM: 70.3
2220
Male, age 76, midline
70.3
Periaquaductal grey, anterior nTPM: 74.1
2502
Female, age 75, unknown
79.0
1947
Male, age 18, unknown
77.9
1795
Male, age 51, unknown
65.5
Periaquaductal grey, dorsal nTPM: 59.9
1831
Male, age 72, unknown
62.5
2850
Male, age 76, both hemispheres
62.0
2464
Female, age 72, unknown
60.5
1840
Male, age 53, unknown
54.4
Periaquaductal grey, lateral nTPM: 56.0
2053
Male, age 18, unknown
66.6
2272
Male, age 74, both hemispheres
53.4
2140
Male, age 76, both hemispheres
48.0
Pretectal area nTPM: 81.1
1816
Male, age 51, unknown
121.9
1944
Female, age 72, unknown
111.9
1815
Male, age 53, unknown
100.4
2007
Male, age 72, unknown
92.0
1817
Female, age 42, unknown
91.9
2667
Female, age 75, unknown
73.3
2407
Male, age 75, both hemispheres
68.0
2273
Male, age 74, both hemispheres
59.7
2224
Female, age 72, unknown
58.9
2825
Male, age 18, unknown
57.9
2316
Male, age 76, right hemisphere
56.2
Red nucleus nTPM: 68.6
1821
Female, age 72, unknown
77.4
1904
Male, age 53, unknown
74.1
2503
Female, age 72, unknown
72.6
2584
Male, age 75, left hemisphere
70.6
2785
Male, age 18, unknown
69.7
1865
Male, age 51, unknown
69.0
2823
Male, age 76, right hemisphere
68.9
2725
Female, age 75, unknown
67.8
2588
Male, age 74, left hemisphere
66.6
1954
Female, age 42, unknown
66.3
2227
Male, age 72, unknown
60.6
2769
Male, age 72, unknown
60.1
Substantia nigra nTPM: 89.3
1916
Female, age 42, unknown
111.6
2241
Male, age 72, unknown
108.0
1889
Female, age 72, unknown
96.2
1941
Male, age 53, unknown
94.6
2409
Female, age 72, unknown
91.2
1851
Male, age 51, unknown
87.2
2699
Male, age 18, unknown
79.3
2583
Male, age 75, right hemisphere
77.9
2665
Male, age 74, both hemispheres
76.7
2590
Female, age 75, unknown
70.4
Superior colliculus nTPM: 79.1
2087
Female, age 72, unknown
99.7
2668
Female, age 75, unknown
98.5
2261
Male, age 18, unknown
92.3
1913
Female, age 42, unknown
84.6
1995
Male, age 72, unknown
80.6
2664
Male, age 75, both hemispheres
73.3
2587
Male, age 74, left hemisphere
70.9
1895
Male, age 76, right hemisphere
66.2
1796
Male, age 53, unknown
64.1
1839
Male, age 51, unknown
61.2
Ventral tegmental area nTPM: 71.6
2410
Female, age 72, unknown
84.4
2218
Male, age 76, both hemispheres
77.5
1915
Female, age 42, unknown
72.0
2223
Female, age 72, unknown
69.9
1942
Male, age 51, unknown
64.0
2021
Male, age 53, unknown
61.9
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
42.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 42.2
Samples: 139
Max nTPM: 66.3
Min nTPM: 26.2
Std nTPM: 7.3
Median nTPM: 41.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
66.3
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
65.2
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
64.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
63.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
56.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
55.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
55.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
55.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
54.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
53.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
53.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
53.1
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
52.2
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
52.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
51.5
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
51.5
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
50.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
49.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
49.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
49.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
49.4
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
48.8
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
48.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
48.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
48.0
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
48.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
47.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
46.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
46.3
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
46.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
45.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
45.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
45.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
45.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
45.4
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
45.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
45.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
45.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
45.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
44.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
44.8
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
44.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
44.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
44.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
44.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
44.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
44.2
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
44.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
43.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
43.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
43.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
43.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
43.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
43.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
43.1
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
43.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
42.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
42.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
42.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
42.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
42.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
42.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
42.5
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
42.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
42.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
42.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
42.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
41.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
41.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
41.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
41.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
41.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
41.5
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
41.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
41.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
41.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
40.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
40.8
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
40.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
40.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
40.4
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
40.3
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
40.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
39.9
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
39.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
39.4
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
39.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
39.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
39.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
39.1
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
38.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
38.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
38.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
38.8
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
38.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
38.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
38.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
38.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
38.5
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
38.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
38.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
38.3
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
38.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
38.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
38.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
38.0
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
38.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
37.2
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
36.6
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
36.4
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
36.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
36.2
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
36.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
36.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
36.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
36.0
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
35.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
35.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
35.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
35.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
34.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
33.8
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
33.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
33.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
33.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
33.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
33.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
33.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
32.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
32.3
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
32.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
32.1
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
32.0
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
30.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
29.8
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
28.6
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
28.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
28.2
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
26.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
171.2
Mouse sample
Sample description
nTPM
Midbrain nTPM: 171.3
Samples: 4
Max nTPM: 173.8
Min nTPM: 166.4
Sample A
Male
171.6
Sample B
Male
173.8
Sample C
Female
173.2
Sample D
Female
166.4
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.