MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.9 nTPM
HPA Brain:22.2 nTPM
GTEx:15.9 nTPM
FANTOM5:24.7 Scaled Tags Per Million
Pig:15.0 nTPM
Mouse:20.0 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 22.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.1
2019 Male, age 18, unknown 23.7
1870 Female, age 42, unknown 22.9
2666 Male, age 74, left hemisphere 22.9
1830 Male, age 51, unknown 21.0
2411 Female, age 72, unknown 21.0
1827 Male, age 72, unknown 20.7
1833 Male, age 53, unknown 20.4
2219 Male, age 76, both hemispheres 20.1
2586 Male, age 75, left hemisphere 20.0
2828 Female, age 72, unknown 18.7
Dorsal raphe nucleus
nTPM: 19.6
1828 Male, age 53, unknown 20.8
2016 Female, age 72, unknown 20.6
2047 Male, age 72, unknown 19.8
2750 Male, age 76, both hemispheres 19.8
2298 Female, age 72, unknown 17.2
Inferior colliculus
nTPM: 20.5
2097 Female, age 72, unknown 21.2
1890 Male, age 53, unknown 20.9
1848 Female, age 42, unknown 20.2
2849 Male, age 72, unknown 19.7
Median raphe nucleus
nTPM: 19.6
2220 Male, age 76, midline 19.6
Periaquaductal grey, anterior
nTPM: 19.4
1947 Male, age 18, unknown 21.3
2502 Female, age 75, unknown 18.8
1795 Male, age 51, unknown 18.0
Periaquaductal grey, dorsal
nTPM: 18.6
1831 Male, age 72, unknown 20.3
1840 Male, age 53, unknown 18.5
2464 Female, age 72, unknown 18.2
2850 Male, age 76, both hemispheres 17.5
Periaquaductal grey, lateral
nTPM: 18.4
2272 Male, age 74, both hemispheres 20.9
2053 Male, age 18, unknown 18.3
2140 Male, age 76, both hemispheres 16.2
Pretectal area
nTPM: 21.2
1944 Female, age 72, unknown 24.4
1816 Male, age 51, unknown 23.9
1817 Female, age 42, unknown 23.6
2007 Male, age 72, unknown 22.8
2407 Male, age 75, both hemispheres 21.4
2273 Male, age 74, both hemispheres 21.2
2667 Female, age 75, unknown 21.1
1815 Male, age 53, unknown 19.3
2825 Male, age 18, unknown 19.0
2224 Female, age 72, unknown 18.7
2316 Male, age 76, right hemisphere 18.3
Red nucleus
nTPM: 22.2
1821 Female, age 72, unknown 26.1
1865 Male, age 51, unknown 25.3
2725 Female, age 75, unknown 23.3
1954 Female, age 42, unknown 22.6
2823 Male, age 76, right hemisphere 22.2
1904 Male, age 53, unknown 22.0
2227 Male, age 72, unknown 21.7
2503 Female, age 72, unknown 21.5
2588 Male, age 74, left hemisphere 21.0
2769 Male, age 72, unknown 20.8
2785 Male, age 18, unknown 20.8
2584 Male, age 75, left hemisphere 19.4
Substantia nigra
nTPM: 22.1
1941 Male, age 53, unknown 26.5
1889 Female, age 72, unknown 23.0
2241 Male, age 72, unknown 22.5
2699 Male, age 18, unknown 22.2
1916 Female, age 42, unknown 22.0
1851 Male, age 51, unknown 21.8
2583 Male, age 75, right hemisphere 21.7
2590 Female, age 75, unknown 21.0
2665 Male, age 74, both hemispheres 20.6
2409 Female, age 72, unknown 19.6
Superior colliculus
nTPM: 19.9
2587 Male, age 74, left hemisphere 23.4
1895 Male, age 76, right hemisphere 21.3
1913 Female, age 42, unknown 20.4
2668 Female, age 75, unknown 20.4
2087 Female, age 72, unknown 19.9
2664 Male, age 75, both hemispheres 19.4
1995 Male, age 72, unknown 18.9
2261 Male, age 18, unknown 18.9
1796 Male, age 53, unknown 18.4
1839 Male, age 51, unknown 18.4
Ventral tegmental area
nTPM: 20.4
2410 Female, age 72, unknown 22.5
1915 Female, age 42, unknown 21.4
2223 Female, age 72, unknown 20.6
2218 Male, age 76, both hemispheres 19.7
2021 Male, age 53, unknown 19.5
1942 Male, age 51, unknown 18.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 15.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.9
Samples: 139

Max nTPM: 26.9
Min nTPM: 10.4
Std nTPM: 3.1
Median nTPM: 15.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 26.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 26.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 23.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 23.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 22.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 22.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 22.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 22.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 21.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 21.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 21.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 24.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.7
FF:10158-103A5 76 years, female 24.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 15.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.1
Samples: 4

Max nTPM: 15.3
Min nTPM: 12.0
Sample A Female 12.0
Sample B Female 12.2
Sample C Male 15.3
Sample D Male 12.8
Midbrain
nTPM: 13.6
Samples: 4

Max nTPM: 14.6
Min nTPM: 11.8
Sample A Female 11.8
Sample B Female 14.6
Sample C Male 14.2
Sample D Male 13.7
Periaqueductal gray
nTPM: 15.0
Samples: 3

Max nTPM: 16.4
Min nTPM: 13.8
Sample B Female 13.8
Sample C Male 16.4
Sample D Male 14.9
Superior colliculi
nTPM: 13.2
Samples: 4

Max nTPM: 14.5
Min nTPM: 10.9
Sample A Female 10.9
Sample B Female 13.3
Sample C Male 14.2
Sample D Male 14.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 20.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.0
Samples: 4

Max nTPM: 22.2
Min nTPM: 18.1
Sample A Male 18.1
Sample B Male 21.1
Sample C Female 22.2
Sample D Female 18.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
677 Antisense, RP_Baylor_103296, Mouse strain C57BL/6J (56 days, male) 1.8
68341663 Antisense, RP_041207_02_A01, Mouse strain C57BL/6J (56 days, male) 0.5

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