MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.6 nTPM
HPA Brain:53.3 nTPM
GTEx:12.6 nTPM
FANTOM5:52.0 Scaled Tags Per Million
Pig:30.9 nTPM
Mouse:9.3 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 53.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.6
2019 Male, age 18, unknown 48.8
2411 Female, age 72, unknown 47.8
2828 Female, age 72, unknown 46.2
1833 Male, age 53, unknown 45.3
1870 Female, age 42, unknown 44.8
1830 Male, age 51, unknown 44.4
1827 Male, age 72, unknown 39.1
2219 Male, age 76, both hemispheres 37.7
2586 Male, age 75, left hemisphere 37.5
2666 Male, age 74, left hemisphere 34.3
Dorsal raphe nucleus
nTPM: 51.2
2016 Female, age 72, unknown 57.5
2298 Female, age 72, unknown 55.5
2750 Male, age 76, both hemispheres 49.3
1828 Male, age 53, unknown 47.1
2047 Male, age 72, unknown 46.5
Inferior colliculus
nTPM: 45.0
2097 Female, age 72, unknown 49.7
1848 Female, age 42, unknown 45.9
1890 Male, age 53, unknown 44.8
2849 Male, age 72, unknown 39.5
Median raphe nucleus
nTPM: 46.9
2220 Male, age 76, midline 46.9
Periaquaductal grey, anterior
nTPM: 43.4
2502 Female, age 75, unknown 46.2
1795 Male, age 51, unknown 43.6
1947 Male, age 18, unknown 40.2
Periaquaductal grey, dorsal
nTPM: 48.4
1840 Male, age 53, unknown 50.6
2850 Male, age 76, both hemispheres 50.4
2464 Female, age 72, unknown 47.9
1831 Male, age 72, unknown 44.7
Periaquaductal grey, lateral
nTPM: 48.6
2053 Male, age 18, unknown 50.6
2140 Male, age 76, both hemispheres 48.9
2272 Male, age 74, both hemispheres 46.3
Pretectal area
nTPM: 43.9
2224 Female, age 72, unknown 54.6
2273 Male, age 74, both hemispheres 53.1
2667 Female, age 75, unknown 49.9
2316 Male, age 76, right hemisphere 48.5
1944 Female, age 72, unknown 42.5
2407 Male, age 75, both hemispheres 41.6
2825 Male, age 18, unknown 40.8
1815 Male, age 53, unknown 40.7
1817 Female, age 42, unknown 37.9
1816 Male, age 51, unknown 37.7
2007 Male, age 72, unknown 35.0
Red nucleus
nTPM: 43.4
1904 Male, age 53, unknown 52.4
1821 Female, age 72, unknown 49.4
2503 Female, age 72, unknown 48.3
1954 Female, age 42, unknown 47.1
2769 Male, age 72, unknown 46.0
2227 Male, age 72, unknown 44.2
2823 Male, age 76, right hemisphere 43.8
1865 Male, age 51, unknown 43.1
2725 Female, age 75, unknown 42.0
2785 Male, age 18, unknown 37.6
2584 Male, age 75, left hemisphere 34.4
2588 Male, age 74, left hemisphere 32.9
Substantia nigra
nTPM: 53.3
2241 Male, age 72, unknown 75.6
1916 Female, age 42, unknown 66.8
2699 Male, age 18, unknown 65.8
2409 Female, age 72, unknown 63.2
1851 Male, age 51, unknown 56.5
1941 Male, age 53, unknown 43.0
2590 Female, age 75, unknown 41.7
1889 Female, age 72, unknown 41.6
2583 Male, age 75, right hemisphere 39.4
2665 Male, age 74, both hemispheres 39.3
Superior colliculus
nTPM: 42.9
1995 Male, age 72, unknown 48.0
2587 Male, age 74, left hemisphere 47.8
1839 Male, age 51, unknown 45.4
1913 Female, age 42, unknown 45.1
1895 Male, age 76, right hemisphere 45.0
2668 Female, age 75, unknown 44.2
1796 Male, age 53, unknown 40.0
2664 Male, age 75, both hemispheres 38.9
2087 Female, age 72, unknown 37.7
2261 Male, age 18, unknown 36.6
Ventral tegmental area
nTPM: 50.8
1915 Female, age 42, unknown 56.0
2021 Male, age 53, unknown 55.1
2410 Female, age 72, unknown 53.2
1942 Male, age 51, unknown 47.4
2223 Female, age 72, unknown 47.4
2218 Male, age 76, both hemispheres 45.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 12.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.6
Samples: 139

Max nTPM: 29.6
Min nTPM: 3.1
Std nTPM: 3.9
Median nTPM: 11.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 29.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 29.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 21.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 19.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 19.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 19.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 18.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 18.7
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 18.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 18.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 18.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 52.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.0
FF:10158-103A5 76 years, female 52.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 30.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.9
Samples: 4

Max nTPM: 36.1
Min nTPM: 24.8
Sample A Female 36.1
Sample B Female 32.8
Sample C Male 29.9
Sample D Male 24.8
Midbrain
nTPM: 29.4
Samples: 4

Max nTPM: 42.4
Min nTPM: 19.4
Sample A Female 42.4
Sample B Female 33.0
Sample C Male 22.8
Sample D Male 19.4
Periaqueductal gray
nTPM: 27.3
Samples: 3

Max nTPM: 28.8
Min nTPM: 25.0
Sample B Female 28.0
Sample C Male 28.8
Sample D Male 25.0
Superior colliculi
nTPM: 24.4
Samples: 4

Max nTPM: 26.6
Min nTPM: 19.8
Sample A Female 26.3
Sample B Female 26.6
Sample C Male 24.8
Sample D Male 19.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 9.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.3
Samples: 4

Max nTPM: 9.6
Min nTPM: 9.1
Sample A Male 9.1
Sample B Male 9.3
Sample C Female 9.3
Sample D Female 9.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
74988745 Antisense, RP_051130_01_A02, Mouse strain C57BL/6J (56 days, male) 0.5
75233617 Antisense, RP_051130_01_A02, Mouse strain C57BL/6J (56 days, male) 0.3

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