MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.8 nTPM
HPA Brain:28.4 nTPM
GTEx:4.8 nTPM
FANTOM5:14.9 Scaled Tags Per Million
Pig:7.4 nTPM
Mouse:2.6 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 28.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.1
2666 Male, age 74, left hemisphere 34.1
2019 Male, age 18, unknown 29.2
2219 Male, age 76, both hemispheres 28.1
1830 Male, age 51, unknown 27.6
1827 Male, age 72, unknown 25.2
1833 Male, age 53, unknown 25.0
2828 Female, age 72, unknown 23.1
2411 Female, age 72, unknown 19.7
2586 Male, age 75, left hemisphere 19.6
1870 Female, age 42, unknown 19.3
Dorsal raphe nucleus
nTPM: 21.1
2047 Male, age 72, unknown 22.7
2750 Male, age 76, both hemispheres 22.1
1828 Male, age 53, unknown 22.0
2016 Female, age 72, unknown 21.9
2298 Female, age 72, unknown 17.0
Inferior colliculus
nTPM: 21.5
1890 Male, age 53, unknown 23.6
2849 Male, age 72, unknown 22.7
2097 Female, age 72, unknown 20.9
1848 Female, age 42, unknown 18.8
Median raphe nucleus
nTPM: 28.4
2220 Male, age 76, midline 28.4
Periaquaductal grey, anterior
nTPM: 23.6
1947 Male, age 18, unknown 24.6
2502 Female, age 75, unknown 23.7
1795 Male, age 51, unknown 22.5
Periaquaductal grey, dorsal
nTPM: 22.0
2850 Male, age 76, both hemispheres 27.6
2464 Female, age 72, unknown 22.8
1831 Male, age 72, unknown 20.8
1840 Male, age 53, unknown 16.9
Periaquaductal grey, lateral
nTPM: 22.0
2140 Male, age 76, both hemispheres 26.8
2272 Male, age 74, both hemispheres 20.3
2053 Male, age 18, unknown 18.8
Pretectal area
nTPM: 20.1
2316 Male, age 76, right hemisphere 26.6
1817 Female, age 42, unknown 23.3
1944 Female, age 72, unknown 22.7
2224 Female, age 72, unknown 21.8
1816 Male, age 51, unknown 21.2
2007 Male, age 72, unknown 19.5
1815 Male, age 53, unknown 19.4
2825 Male, age 18, unknown 17.9
2667 Female, age 75, unknown 17.6
2407 Male, age 75, both hemispheres 15.8
2273 Male, age 74, both hemispheres 15.1
Red nucleus
nTPM: 26.6
2588 Male, age 74, left hemisphere 30.3
2227 Male, age 72, unknown 29.7
1904 Male, age 53, unknown 29.1
1954 Female, age 42, unknown 29.1
2823 Male, age 76, right hemisphere 29.0
2769 Male, age 72, unknown 28.4
1821 Female, age 72, unknown 26.0
2584 Male, age 75, left hemisphere 24.8
2725 Female, age 75, unknown 24.4
2785 Male, age 18, unknown 23.9
2503 Female, age 72, unknown 23.2
1865 Male, age 51, unknown 21.9
Substantia nigra
nTPM: 24.4
2665 Male, age 74, both hemispheres 38.0
2699 Male, age 18, unknown 30.7
2590 Female, age 75, unknown 24.9
1916 Female, age 42, unknown 23.7
2241 Male, age 72, unknown 23.5
1941 Male, age 53, unknown 23.1
1851 Male, age 51, unknown 21.1
2409 Female, age 72, unknown 20.3
1889 Female, age 72, unknown 19.8
2583 Male, age 75, right hemisphere 18.5
Superior colliculus
nTPM: 20.9
2087 Female, age 72, unknown 24.9
2668 Female, age 75, unknown 24.2
2587 Male, age 74, left hemisphere 23.6
1796 Male, age 53, unknown 23.2
1839 Male, age 51, unknown 23.2
1895 Male, age 76, right hemisphere 21.1
1913 Female, age 42, unknown 18.7
2261 Male, age 18, unknown 18.4
2664 Male, age 75, both hemispheres 16.2
1995 Male, age 72, unknown 15.9
Ventral tegmental area
nTPM: 22.5
2218 Male, age 76, both hemispheres 30.3
1942 Male, age 51, unknown 23.7
2223 Female, age 72, unknown 22.8
2021 Male, age 53, unknown 20.8
1915 Female, age 42, unknown 20.7
2410 Female, age 72, unknown 16.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 4.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.8
Samples: 139

Max nTPM: 21.6
Min nTPM: 1.3
Std nTPM: 3.0
Median nTPM: 4.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 21.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 20.8
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 15.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 13.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 11.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 10.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 9.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 9.1
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 9.0
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 8.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 8.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 14.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.9
FF:10158-103A5 76 years, female 14.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 7.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.4
Samples: 4

Max nTPM: 9.7
Min nTPM: 4.3
Sample A Female 4.3
Sample B Female 9.7
Sample C Male 6.1
Sample D Male 9.5
Midbrain
nTPM: 6.5
Samples: 4

Max nTPM: 8.1
Min nTPM: 5.1
Sample A Female 5.1
Sample B Female 5.7
Sample C Male 8.1
Sample D Male 7.2
Periaqueductal gray
nTPM: 6.7
Samples: 3

Max nTPM: 9.4
Min nTPM: 5.0
Sample B Female 9.4
Sample C Male 5.0
Sample D Male 5.7
Superior colliculi
nTPM: 7.0
Samples: 4

Max nTPM: 10.2
Min nTPM: 4.4
Sample A Female 6.0
Sample B Female 4.4
Sample C Male 7.3
Sample D Male 10.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.6
Samples: 4

Max nTPM: 3.8
Min nTPM: 1.7
Sample A Male 2.7
Sample B Male 3.8
Sample C Female 2.0
Sample D Female 1.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
77924536 Antisense, RP_070219_02_B08, Mouse strain C57BL/6J (56 days, male) 0.1

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