MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:0.1 nTPM
HPA Brain:12.7 nTPM
GTEx:0.1 nTPM
FANTOM5:0.0 Scaled Tags Per Million
Pig:0.4 nTPM
Mouse:0.1 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 12.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.8
1827 Male, age 72, unknown 13.5
2219 Male, age 76, both hemispheres 12.8
1830 Male, age 51, unknown 12.6
2666 Male, age 74, left hemisphere 12.6
2828 Female, age 72, unknown 12.2
1833 Male, age 53, unknown 11.5
2586 Male, age 75, left hemisphere 11.3
2411 Female, age 72, unknown 11.1
2019 Male, age 18, unknown 10.2
1870 Female, age 42, unknown 9.9
Dorsal raphe nucleus
nTPM: 11.8
2047 Male, age 72, unknown 14.1
2016 Female, age 72, unknown 13.4
2750 Male, age 76, both hemispheres 11.5
2298 Female, age 72, unknown 10.6
1828 Male, age 53, unknown 9.2
Inferior colliculus
nTPM: 10.6
1890 Male, age 53, unknown 12.8
2097 Female, age 72, unknown 10.3
2849 Male, age 72, unknown 9.7
1848 Female, age 42, unknown 9.5
Median raphe nucleus
nTPM: 10.3
2220 Male, age 76, midline 10.3
Periaquaductal grey, anterior
nTPM: 12.2
1947 Male, age 18, unknown 14.7
1795 Male, age 51, unknown 12.5
2502 Female, age 75, unknown 9.3
Periaquaductal grey, dorsal
nTPM: 11.2
2464 Female, age 72, unknown 13.3
1831 Male, age 72, unknown 11.9
2850 Male, age 76, both hemispheres 10.4
1840 Male, age 53, unknown 9.3
Periaquaductal grey, lateral
nTPM: 12.7
2140 Male, age 76, both hemispheres 13.5
2053 Male, age 18, unknown 12.4
2272 Male, age 74, both hemispheres 12.1
Pretectal area
nTPM: 11.8
2407 Male, age 75, both hemispheres 14.2
2316 Male, age 76, right hemisphere 14.1
2667 Female, age 75, unknown 13.3
2224 Female, age 72, unknown 12.5
1944 Female, age 72, unknown 11.9
2273 Male, age 74, both hemispheres 11.8
1815 Male, age 53, unknown 11.1
2825 Male, age 18, unknown 11.1
1816 Male, age 51, unknown 10.4
2007 Male, age 72, unknown 9.9
1817 Female, age 42, unknown 9.7
Red nucleus
nTPM: 11.0
2823 Male, age 76, right hemisphere 14.8
2584 Male, age 75, left hemisphere 14.3
1865 Male, age 51, unknown 13.6
2227 Male, age 72, unknown 12.0
2769 Male, age 72, unknown 11.5
2588 Male, age 74, left hemisphere 10.4
2503 Female, age 72, unknown 10.3
2785 Male, age 18, unknown 9.9
1904 Male, age 53, unknown 9.8
1954 Female, age 42, unknown 9.5
2725 Female, age 75, unknown 9.4
1821 Female, age 72, unknown 6.8
Substantia nigra
nTPM: 10.4
1941 Male, age 53, unknown 16.4
2590 Female, age 75, unknown 12.3
2583 Male, age 75, right hemisphere 12.1
2699 Male, age 18, unknown 11.4
2665 Male, age 74, both hemispheres 9.9
2409 Female, age 72, unknown 9.3
1889 Female, age 72, unknown 8.7
1851 Male, age 51, unknown 8.4
1916 Female, age 42, unknown 8.1
2241 Male, age 72, unknown 7.4
Superior colliculus
nTPM: 11.7
2664 Male, age 75, both hemispheres 16.2
1895 Male, age 76, right hemisphere 13.2
2668 Female, age 75, unknown 12.4
2087 Female, age 72, unknown 11.7
1995 Male, age 72, unknown 11.4
2261 Male, age 18, unknown 11.3
1913 Female, age 42, unknown 10.7
1839 Male, age 51, unknown 10.3
1796 Male, age 53, unknown 9.7
2587 Male, age 74, left hemisphere 9.7
Ventral tegmental area
nTPM: 10.1
2223 Female, age 72, unknown 12.0
2021 Male, age 53, unknown 10.7
1942 Male, age 51, unknown 10.6
2218 Male, age 76, both hemispheres 10.5
2410 Female, age 72, unknown 9.2
1915 Female, age 42, unknown 7.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 0.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 0.1
Samples: 139

Max nTPM: 2.3
Min nTPM: 0.0
Std nTPM: 0.2
Median nTPM: 0.1
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 2.3
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 2.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 1.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 0.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 0.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 0.5
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 0.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 0.4
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 0.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 0.3
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 0.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.0
FF:10158-103A5 76 years, female 0.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 0.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.4
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.2
Sample A Female 0.5
Sample B Female 0.4
Sample C Male 0.3
Sample D Male 0.2
Midbrain
nTPM: 0.3
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 0.2
Sample C Male 0.6
Sample D Male 0.2
Periaqueductal gray
nTPM: 0.2
Samples: 3

Max nTPM: 0.3
Min nTPM: 0.1
Sample B Female 0.3
Sample C Male 0.3
Sample D Male 0.1
Superior colliculi
nTPM: 0.3
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.2
Sample A Female 0.3
Sample B Female 0.2
Sample C Male 0.5
Sample D Male 0.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.1
Sample C Female 0.3
Sample D Female 0.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71763441 Antisense, RP_050921_02_A03, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org