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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
459.8
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 154.9
2301
Female, age 85, both hemispheres
174.0
1984
Male, age 76, both hemispheres
170.4
2090
Male, age 80, both hemispheres
144.2
2188
Female, age 91, both hemispheres
131.2
Dorsal cochlear nucleus nTPM: 191.2
2058
Male, age 76, both hemispheres
251.4
2187
Female, age 91, both hemispheres
242.1
2370
Male, age 61, both hemispheres
197.3
2802
Male, age 74, right hemisphere
140.3
2378
Male, age 80, both hemispheres
125.0
Dorsal tegmental nucleus nTPM: 234.4
2083
Male, age 80, both hemispheres
277.8
1936
Male, age 76, left hemisphere
239.6
2358
Male, age 61, both hemispheres
230.1
2326
Male, age 74, both hemispheres
190.2
Dorsolateral tegmental area nTPM: 226.7
2141
Male, age 76, both hemispheres
307.4
2654
Male, age 80, both hemispheres
284.0
2360
Male, age 74, both hemispheres
216.0
2751
Female, age 85, both hemispheres
212.3
2337
Male, age 61, both hemispheres
113.8
Kolliker-Fuse nucleus nTPM: 227.7
2163
Male, age 80, both hemispheres
386.4
2793
Female, age 91, left hemisphere
152.1
2315
Male, age 76, right hemisphere
144.5
Lateral lemniscal nuclei nTPM: 255.0
2169
Male, age 76, both hemispheres
367.8
2453
Male, age 74, right hemisphere
275.0
2036
Male, age 80, both hemispheres
258.9
2746
Female, age 85, left hemisphere
213.6
2320
Female, age 91, left hemisphere
159.4
Lateral parabrachial nucleus nTPM: 203.0
2139
Female, age 85, right hemisphere
283.9
2790
Male, age 61, both hemispheres
244.6
2013
Male, age 80, both hemispheres
190.7
2792
Male, age 76, both hemispheres
92.8
Lateral vestibular nucleus nTPM: 286.6
2184
Male, age 76, both hemispheres
351.9
2311
Male, age 80, both hemispheres
221.2
Locus coeruleus nTPM: 459.8
2720
Male, age 74, both hemispheres
582.5
2123
Female, age 91, both hemispheres
574.3
2788
Male, age 74, unknown
455.1
2014
Male, age 55, unknown
439.1
2317
Female, age 72, unknown
394.3
2162
Male, age 80, both hemispheres
390.7
1980
Male, age 76, both hemispheres
382.2
Medial parabrachial nucleus nTPM: 255.9
2786
Male, age 76, both hemispheres
296.2
2854
Male, age 80, both hemispheres
277.2
2156
Male, age 61, both hemispheres
270.6
2170
Female, age 91, both hemispheres
260.9
2463
Female, age 85, right hemisphere
174.7
Medial periolivary nuclei nTPM: 236.9
2063
Male, age 76, both hemispheres
350.0
2171
Female, age 85, both hemispheres
342.1
2791
Male, age 74, right hemisphere
213.9
2458
Female, age 91, both hemispheres
147.4
2081
Male, age 80, both hemispheres
131.2
Motor facial nucleus nTPM: 253.2
2062
Male, age 76, both hemispheres
364.3
2365
Male, age 74, right hemisphere
264.5
2327
Male, age 80, both hemispheres
251.0
2697
Female, age 85, both hemispheres
238.8
2126
Male, age 61, both hemispheres
219.3
2795
Female, age 91, both hemispheres
181.5
Motor trigeminal nucleus nTPM: 228.9
2309
Male, age 76, both hemispheres
278.4
2335
Male, age 61, both hemispheres
268.8
2079
Male, age 80, both hemispheres
234.6
2560
Male, age 74, both hemispheres
200.0
2321
Female, age 91, both hemispheres
162.7
Nuclei of the trapezoid body nTPM: 276.3
2159
Male, age 61, both hemispheres
356.7
2735
Female, age 85, both hemispheres
331.4
1983
Male, age 76, both hemispheres
319.7
2166
Male, age 80, both hemispheres
206.5
2368
Female, age 91, both hemispheres
167.1
Nucleus raphe magnus nTPM: 311.2
2160
Male, age 61, both hemispheres
476.3
2172
Female, age 85, both hemispheres
386.5
2455
Male, age 74, both hemispheres
363.9
2328
Male, age 80, both hemispheres
234.4
2051
Male, age 76, both hemispheres
234.1
2459
Female, age 91, both hemispheres
172.1
Paramedian reticular nucleus nTPM: 306.9
2050
Female, age 85, both hemispheres
356.7
2313
Male, age 61, both hemispheres
350.3
2057
Male, age 80, both hemispheres
289.6
2052
Male, age 76, both hemispheres
231.2
Pedunculopontine tegmental nucleus nTPM: 284.4
2334
Male, age 80, both hemispheres
322.4
1921
Female, age 85, both hemispheres
298.2
2338
Male, age 61, both hemispheres
232.5
Pontine nuclei nTPM: 265.4
2727
Male, age 61, right hemisphere
414.2
2787
Female, age 85, both hemispheres
355.8
1863
Male, age 55, unknown
306.4
1968
Male, age 76, left hemisphere
287.1
2109
Female, age 72, unknown
278.6
2454
Male, age 74, left hemisphere
196.2
2115
Male, age 80, left hemisphere
149.5
2319
Female, age 91, both hemispheres
135.3
Pontine raphe nucleus nTPM: 350.5
2853
Male, age 76, midline
357.2
2122
Female, age 85, midline
343.9
Posteroventral cochlear nucleus nTPM: 191.2
2752
Female, age 85, both hemispheres
419.6
2070
Male, age 76, both hemispheres
253.8
2371
Male, age 61, both hemispheres
160.5
2341
Male, age 80, both hemispheres
84.7
2135
Female, age 91, both hemispheres
37.2
Principal sensory trigeminal nucleus nTPM: 287.5
2158
Male, age 61, both hemispheres
407.4
2324
Male, age 76, both hemispheres
322.6
2008
Male, age 80, left hemisphere
277.0
2367
Female, age 91, left hemisphere
142.9
Reticular pontine nucleus, caudal nTPM: 216.5
2092
Male, age 76, both hemispheres
266.0
2332
Male, age 80, right hemisphere
257.1
2559
Male, age 74, both hemispheres
201.9
2457
Female, age 91, both hemispheres
140.8
Reticular pontine nucleus, oral nTPM: 241.6
2361
Male, age 74, both hemispheres
299.5
2012
Female, age 85, both hemispheres
270.8
2167
Male, age 76, both hemispheres
268.4
1939
Male, age 80, both hemispheres
232.9
2366
Female, age 91, both hemispheres
136.5
Reticulotegmental nucleus nTPM: 256.0
2325
Male, age 76, both hemispheres
352.4
2322
Female, age 91, both hemispheres
240.2
2452
Male, age 74, both hemispheres
219.3
2333
Male, age 80, both hemispheres
212.3
Spinal trigeminal nucleus, oral nTPM: 298.6
2737
Female, age 85, both hemispheres
313.3
2164
Male, age 80, both hemispheres
303.2
1978
Male, age 76, both hemispheres
279.3
Subcoeruleus area nTPM: 313.4
2323
Female, age 91, left hemisphere
501.2
1958
Male, age 80, both hemispheres
334.2
2451
Male, age 74, both hemispheres
283.0
2089
Male, age 76, left hemisphere
275.0
2369
Female, age 85, left hemisphere
173.3
Superior olive nTPM: 232.1
1875
Female, age 85, both hemispheres
324.9
2020
Male, age 76, both hemispheres
237.6
2364
Male, age 74, right hemisphere
219.6
2329
Male, age 80, right hemisphere
200.8
2561
Female, age 91, both hemispheres
177.9
Ventral periolivary nuclei nTPM: 270.5
2130
Female, age 85, both hemispheres
345.8
2165
Male, age 80, both hemispheres
283.7
2794
Female, age 91, left hemisphere
232.7
2023
Male, age 76, both hemispheres
219.6
Ventrolateral tegmental area, A5 NE cell group nTPM: 232.9
2449
Male, age 74, both hemispheres
315.7
2840
Female, age 85, both hemispheres
296.6
1959
Male, age 76, both hemispheres
252.7
2359
Male, age 61, both hemispheres
222.7
2161
Male, age 80, both hemispheres
193.8
2456
Female, age 91, both hemispheres
115.7
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
435.6
Pig sample
Sample description
nTPM
Pons nTPM: 435.6
Samples: 4
Max nTPM: 497.7
Min nTPM: 406.5
Sample A
Female
497.7
Sample B
Female
406.5
Sample C
Male
420.6
Sample D
Male
417.5
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
