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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:908.5 nTPM
GTEx:908.5 nTPM
FANTOM5:2173.6 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA001612Antibody HPA001613Antibody CAB004393Antibody CAB068187
Squamous epithelial cells LowNot detectedMediumNot detected









VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

908.5
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 908.5
Samples: 170

Max nTPM: 2747.6
Min nTPM: 137.8
Std nTPM: 440.9
Median nTPM: 850.9
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 2747.6
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1891.4
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 1871.6
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1851.9
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 1833.9
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 1799.6
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 1775.2
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 1749.5
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 1685.4
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1666.9
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1633.1
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1630.5
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 1577.8
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1561.0
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1559.0
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1523.4
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1509.2
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1481.9
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1481.2
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 1443.5
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1409.1
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1406.8
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 1392.3
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1377.5
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 1368.1
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1361.0
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1344.8
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1329.9
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 1308.5
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1301.0
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1295.4
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 1292.3
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1290.9
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1281.6
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1281.0
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 1278.4
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1274.7
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1273.9
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1259.6
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 1248.4
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1241.5
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 1239.8
GTEX-16NPV-2526-SM-6M483 50-59 years, female 1236.4
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1233.0
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 1216.5
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1201.4
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1201.2
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1194.6
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1189.8
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 1152.6
GTEX-1C475-0526-SM-793AC 40-49 years, female 1152.5
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1129.5
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1052.8
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 1049.0
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 1046.4
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1045.0
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1043.1
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1041.5
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 1032.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1023.4
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 1023.0
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1021.4
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1020.0
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1015.6
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 1015.4
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 981.6
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 977.8
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 977.2
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 974.7
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 972.2
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 963.1
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 958.2
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 945.0
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 939.7
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 938.0
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 930.1
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 911.0
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 902.7
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 900.7
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 898.7
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 884.4
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 871.6
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 869.9
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 867.3
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 860.0
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 841.7
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 838.8
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 836.8
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 829.9
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 824.2
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 814.4
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 809.2
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 809.0
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 799.9
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 799.0
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 792.2
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 778.4
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 777.8
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 776.2
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 773.5
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 770.9
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 745.3
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 744.4
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 731.5
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 731.0
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 727.3
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 721.9
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 720.1
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 708.1
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 702.6
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 698.4
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 695.9
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 689.1
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 678.9
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 677.9
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 677.7
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 674.9
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 668.8
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 660.1
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 652.8
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 647.7
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 646.7
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 629.1
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 628.9
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 626.5
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 612.0
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 606.7
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 590.0
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 583.7
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 583.6
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 576.4
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 571.3
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 558.1
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 554.8
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 546.9
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 545.6
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 536.3
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 528.0
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 525.5
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 505.9
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 500.7
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 479.4
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 467.5
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 465.3
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 457.5
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 457.3
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 432.6
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 418.4
GTEX-14PKU-1326-SM-6871B 40-49 years, female 417.2
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 412.7
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 389.4
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 377.4
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 375.9
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 370.0
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 349.3
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 346.9
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 275.3
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 270.2
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 268.7
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 240.6
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 231.9
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 216.2
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 200.9
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 200.6
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 197.4
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 193.3
GTEX-11I78-2026-SM-5987C 50-59 years, female 185.7
GTEX-S341-1226-SM-4AD5S 40-49 years, female 184.9
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 158.7
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 137.8
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2173.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 2173.6
FF:10204-103F6 68 years, female 2173.6

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