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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
Not detected
Pigment epithelial cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
0.1
nTPM
GTEx:
0.1
nTPM
FANTOM5:
194.8
Scaled Tags Per Million
Pig:
0.3
nTPM
Mouse:
2.1
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA064583
Pigment epithelial cells
High
Photoreceptor cells
Not detected
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.1
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 0.1
Samples: 105
Max nTPM: 0.7
Min nTPM: 0.0
Std nTPM: 0.1
Median nTPM:
413_1
59 years, female
0.7
491_1
89 years, female
0.7
126_1
63 years, male
0.6
389_1
86 years, female
0.5
490_1
67 years, female
0.5
153_1
70 years, female
0.4
246_1
77 years, male
0.4
266_1
85 years, male
0.4
9_1
66 years, female
0.3
89_1
63 years, male
0.3
243_1
75 years, male
0.3
286_1
68 years, female
0.3
291_1
76 years, male
0.3
311_1
78 years, male
0.3
314_1
67 years, male
0.3
396_1
62 years, male
0.3
406_1
79 years, male
0.3
414_1
84 years, female
0.3
466_1
57 years, female
0.3
17_1
71 years, male
0.2
42_1
85 years, male
0.2
43_1
64 years, female
0.2
109_1
81 years, female
0.2
115_1
83 years, male
0.2
119_1
70 years, female
0.2
139_1
64 years, female
0.2
142_1
61 years, female
0.2
145_1
84 years, male
0.2
149_1
88 years, male
0.2
162_1
79 years, female
0.2
163_1
78 years, male
0.2
254_1
77 years, female
0.2
288_1
66 years, female
0.2
313_1
79 years, female
0.2
322_1
76 years, male
0.2
335_1
73 years, female
0.2
351_1
91 years, male
0.2
375_1
74 years, female
0.2
376_1
75 years, female
0.2
379_1
60 years, male
0.2
394_1
75 years, female
0.2
452_1
88 years, female
0.2
495_1
57 years, female
0.2
499_1
55 years, female
0.2
4_1
88 years, female
0.1
18_1
88 years, male
0.1
32_1
67 years, male
0.1
99_1
64 years, male
0.1
120_1
70 years, female
0.1
137_1
83 years, male
0.1
229_1
69 years, female
0.1
237_1
82 years, male
0.1
264_1
73 years, female
0.1
265_1
87 years, male
0.1
292_1
71 years, male
0.1
315_1
62 years, female
0.1
316_1
62 years, male
0.1
318_1
68 years, male
0.1
321_1
62 years, female
0.1
324_1
76 years, male
0.1
347_1
72 years, male
0.1
348_1
84 years, male
0.1
354_1
81 years, female
0.1
355_1
70 years, female
0.1
356_1
87 years, female
0.1
384_1
83 years, male
0.1
386_1
76 years, male
0.1
404_1
82 years, female
0.1
405_1
91 years, male
0.1
425_1
59 years, female
0.1
447_1
81 years, male
0.1
468_1
89 years, male
0.1
480_1
63 years, male
0.1
501_1
88 years, male
0.1
503_1
68 years, male
0.1
526_1
61 years, male
0.1
2_1
77 years, female
0.0
6_1
73 years, female
0.0
35_1
74 years, female
0.0
41_1
94 years, female
0.0
81_1
67 years, male
0.0
117_1
61 years, male
0.0
172_1
72 years, female
0.0
173_1
67 years, male
0.0
177_1
74 years, male
0.0
189_1
76 years, male
0.0
217_1
76 years, male
0.0
218_1
71 years, female
0.0
251_1
78 years, male
0.0
293_1
68 years, female
0.0
295_1
61 years, female
0.0
307_1
66 years, female
0.0
308_1
70 years, female
0.0
317_1
60 years, male
0.0
319_1
81 years, male
0.0
320_1
89 years, female
0.0
349_1
83 years, male
0.0
350_1
84 years, female
0.0
352_1
62 years, male
0.0
353_1
82 years, female
0.0
377_1
82 years, female
0.0
415_1
77 years, female
0.0
506_1
65 years, male
0.0
517_1
88 years, male
0.0
518_1
75 years, female
0.0
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
