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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
10.2
nTPM
HPA Brain:
95.2
nTPM
GTEx:
10.2
nTPM
FANTOM5:
200.7
Scaled Tags Per Million
Pig:
111.4
nTPM
Mouse:
39.6
nTPM
Allen mouse:
6.5
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA060219
Glial cells
Not detected
Neuronal cells
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
95.2
Sample id
Sample description
nTPM
Hippocampus nTPM: 64.6
1898
Male, age 80, left hemisphere
87.7
2621
Female, age 67, right hemisphere
74.3
1855
Male, age 76, left hemisphere
63.6
1911
Female, age 85, right hemisphere
54.5
2529
Female, age 94, left hemisphere
54.5
2148
Female, age 91, left hemisphere
53.3
Dentate gyrus nTPM: 63.0
1927
Female, age 91, both hemispheres
82.6
2010
Male, age 76, both hemispheres
68.5
2246
Female, age 85, both hemispheres
67.7
2531
Female, age 67, both hemispheres
61.8
2530
Female, age 94, left hemisphere
51.8
2528
Male, age 74, both hemispheres
45.7
Entorhinal gyrus nTPM: 69.4
2613
Female, age 94, left hemisphere
83.2
1938
Female, age 85, left hemisphere
82.8
2764
Male, age 80, right hemisphere
76.3
2686
Male, age 75, right hemisphere
64.9
1787
Male, age 76, left hemisphere
63.1
2117
Female, age 91, right hemisphere
45.9
Hippocampus, CA1 nTPM: 85.4
2749
Male, age 80, left hemisphere
150.3
2527
Male, age 74, both hemispheres
80.4
2045
Male, age 76, both hemispheres
67.9
1873
Female, age 85, both hemispheres
66.8
2082
Female, age 91, right hemisphere
61.7
Hippocampus, CA2 nTPM: 62.2
1963
Male, age 80, left hemisphere
80.8
1892
Male, age 76, both hemispheres
77.7
2113
Female, age 91, right hemisphere
58.1
2437
Female, age 94, left hemisphere
57.7
2249
Male, age 74, both hemispheres
52.6
1940
Female, age 85, left hemisphere
46.2
Hippocampus, CA3 nTPM: 77.2
2137
Male, age 80, left hemisphere
149.2
1867
Male, age 76, both hemispheres
72.4
2861
Female, age 67, both hemispheres
67.8
2436
Male, age 74, both hemispheres
66.1
2620
Female, age 94, left hemisphere
55.7
1891
Female, age 85, both hemispheres
51.9
Parahippocampal cortex nTPM: 76.3
2245
Female, age 91, both hemispheres
100.6
2250
Female, age 67, right hemisphere
87.3
1850
Male, age 80, both hemispheres
86.7
2693
Female, age 94, both hemispheres
82.9
2018
Male, age 76, both hemispheres
76.2
1933
Female, age 85, both hemispheres
75.1
1990
Female, age 91, right hemisphere
69.5
2622
Female, age 67, right hemisphere
68.1
2532
Female, age 72, left hemisphere
66.4
2692
Male, age 74, both hemispheres
50.0
Perirhinal gyrus nTPM: 95.2
1847
Female, age 91, left hemisphere
116.5
2521
Female, age 94, right hemisphere
97.3
2848
Male, age 76, right hemisphere
89.2
1794
Male, age 80, right hemisphere
86.4
1841
Female, age 85, right hemisphere
86.3
Subiculum nTPM: 60.5
1901
Male, age 80, both hemispheres
80.9
1977
Female, age 85, both hemispheres
70.7
2438
Female, age 94, left hemisphere
67.7
2042
Male, age 76, both hemispheres
52.6
2619
Male, age 74, both hemispheres
52.6
2729
Female, age 91, right hemisphere
38.6
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
10.2
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 10.2
Samples: 197
Max nTPM: 30.6
Min nTPM: 0.3
Std nTPM: 6.5
Median nTPM: 9.7
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
30.6
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
29.2
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
25.4
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
25.4
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
24.5
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
23.5
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
23.0
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
22.8
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
22.6
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
22.2
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
21.2
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
21.2
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
21.1
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
21.1
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
20.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
20.6
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
20.5
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
20.4
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
20.2
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
19.8
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
19.8
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
19.5
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
19.3
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
18.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
18.7
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
18.0
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
17.9
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
17.8
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
17.3
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
17.2
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
17.0
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
16.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
16.8
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
16.1
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
16.1
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
15.9
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
15.8
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
15.6
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
15.4
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
15.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
15.2
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
15.1
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
15.0
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
14.9
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
14.8
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
14.6
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
14.5
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
14.2
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
14.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
14.2
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
14.1
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
14.0
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
14.0
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
13.9
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
13.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
13.7
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
13.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
13.4
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
13.3
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
13.3
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
13.2
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
13.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
13.2
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
13.1
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
12.7
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
12.5
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
12.5
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
12.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
12.3
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
12.2
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
12.2
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
12.1
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
11.9
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
11.9
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
11.8
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
11.6
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
11.5
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
11.5
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
11.5
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
11.5
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
11.4
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
11.4
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
11.4
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
11.3
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
11.2
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
11.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
11.1
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
10.6
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
10.6
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
10.5
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
10.3
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
10.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
10.2
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
10.1
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
9.9
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
9.9
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
9.8
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
9.7
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
9.7
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
9.7
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
9.6
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
9.5
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
9.5
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
9.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
9.4
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
9.4
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
9.4
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
9.3
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
9.2
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
9.1
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
9.0
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
8.9
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
8.9
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
8.8
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
8.8
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
8.6
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
8.2
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
8.0
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
8.0
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
7.9
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
7.9
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
7.8
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
7.8
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
7.7
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
7.6
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
7.6
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
7.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
7.2
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
7.0
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
6.9
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
6.7
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
6.5
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
6.5
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
6.4
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
5.9
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
5.8
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
5.7
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
5.7
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
5.5
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
5.3
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
5.2
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
5.2
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
5.1
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
5.1
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
4.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
4.9
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
4.8
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
4.5
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
4.4
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
4.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
4.3
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
4.2
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
4.1
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
3.8
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
3.8
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
3.7
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
3.6
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
3.4
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
3.4
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
3.2
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
3.2
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
3.1
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
3.1
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
3.1
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
2.9
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
2.8
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
2.7
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
2.7
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
2.7
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
2.6
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
2.5
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
2.5
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
2.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
2.3
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
2.1
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
2.1
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
2.0
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
1.8
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
1.8
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
1.8
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
1.8
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
1.7
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
1.7
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
1.6
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
1.6
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
1.6
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
1.6
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
1.3
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
1.2
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
1.2
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
1.1
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
0.9
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
0.9
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
0.7
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
0.6
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
0.4
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
0.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
39.6
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 39.6
Samples: 4
Max nTPM: 47.5
Min nTPM: 36.6
Sample A
Male
36.8
Sample B
Male
36.6
Sample C
Female
37.5
Sample D
Female
47.5
Hippocampal formation nTPM: 34.6
Samples: 4
Max nTPM: 36.8
Min nTPM: 32.8
Sample A
Male
35.9
Sample B
Male
36.8
Sample C
Female
33.0
Sample D
Female
32.8
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.