We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.
Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)
Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
453.6
Sample id
Sample description
nTPM
Hippocampus nTPM: 244.9
1898
Male, age 80, left hemisphere
340.9
2148
Female, age 91, left hemisphere
303.1
2621
Female, age 67, right hemisphere
290.5
1855
Male, age 76, left hemisphere
263.4
2529
Female, age 94, left hemisphere
146.4
1911
Female, age 85, right hemisphere
124.9
Dentate gyrus nTPM: 284.5
2531
Female, age 67, both hemispheres
352.1
1927
Female, age 91, both hemispheres
333.8
2530
Female, age 94, left hemisphere
333.4
2246
Female, age 85, both hemispheres
247.9
2528
Male, age 74, both hemispheres
223.3
2010
Male, age 76, both hemispheres
216.3
Entorhinal gyrus nTPM: 327.0
2613
Female, age 94, left hemisphere
428.4
2764
Male, age 80, right hemisphere
407.4
2686
Male, age 75, right hemisphere
346.3
1787
Male, age 76, left hemisphere
299.6
1938
Female, age 85, left hemisphere
299.4
2117
Female, age 91, right hemisphere
181.1
Hippocampus, CA1 nTPM: 236.7
1873
Female, age 85, both hemispheres
270.7
2045
Male, age 76, both hemispheres
263.2
2749
Male, age 80, left hemisphere
233.2
2082
Female, age 91, right hemisphere
228.6
2527
Male, age 74, both hemispheres
187.8
Hippocampus, CA2 nTPM: 232.8
2437
Female, age 94, left hemisphere
335.0
1892
Male, age 76, both hemispheres
325.6
1940
Female, age 85, left hemisphere
210.3
1963
Male, age 80, left hemisphere
206.4
2113
Female, age 91, right hemisphere
204.8
2249
Male, age 74, both hemispheres
114.8
Hippocampus, CA3 nTPM: 260.2
2620
Female, age 94, left hemisphere
498.1
2861
Female, age 67, both hemispheres
382.6
1867
Male, age 76, both hemispheres
224.9
1891
Female, age 85, both hemispheres
183.9
2436
Male, age 74, both hemispheres
145.5
2137
Male, age 80, left hemisphere
125.9
Parahippocampal cortex nTPM: 358.3
2245
Female, age 91, both hemispheres
452.1
2622
Female, age 67, right hemisphere
446.8
2693
Female, age 94, both hemispheres
425.2
1850
Male, age 80, both hemispheres
395.5
2532
Female, age 72, left hemisphere
357.9
1990
Female, age 91, right hemisphere
351.2
1933
Female, age 85, both hemispheres
333.3
2250
Female, age 67, right hemisphere
330.7
2692
Male, age 74, both hemispheres
257.5
2018
Male, age 76, both hemispheres
232.6
Perirhinal gyrus nTPM: 453.6
1847
Female, age 91, left hemisphere
528.8
1794
Male, age 80, right hemisphere
503.1
2521
Female, age 94, right hemisphere
444.0
1841
Female, age 85, right hemisphere
426.8
2848
Male, age 76, right hemisphere
365.2
Subiculum nTPM: 223.1
2438
Female, age 94, left hemisphere
308.0
2619
Male, age 74, both hemispheres
292.6
1977
Female, age 85, both hemispheres
272.8
1901
Male, age 80, both hemispheres
179.0
2729
Female, age 91, right hemisphere
175.0
2042
Male, age 76, both hemispheres
111.4
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
241.4
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 241.4
Samples: 255
Max nTPM: 720.9
Min nTPM: 8.4
Std nTPM: 160.2
Median nTPM: 225.0
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
720.9
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
706.9
GTEX-1O9I2-0011-R1a-SM-F2TAW
50-59 years, male
670.5
GTEX-1JJ6O-0011-R1b-SM-F2I2M
60-69 years, male
635.1
GTEX-1RQEC-0011-R1b-SM-F2I2E
60-69 years, male
622.6
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
620.1
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
614.5
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
612.5
GTEX-1N2EF-0011-R1a-SM-F2TAT
60-69 years, male
605.1
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
573.1
GTEX-11DXY-0011-R1b-SM-GI4VQ
60-69 years, male
550.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
545.3
GTEX-1P4AB-0011-R1b-SM-F2TAV
50-59 years, male
536.2
GTEX-1I19N-0011-R1b-SM-GOR1A
70-79 years, male
536.0
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
528.8
GTEX-1PPGY-0011-R1b-SM-G8LN3
60-69 years, male
516.4
GTEX-11ZUS-0011-R1a-SM-GI4W7
30-39 years, male
515.9
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
512.4
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
500.5
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
491.2
GTEX-1MA7X-0011-R1b-SM-F2TAB
60-69 years, male
485.1
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
482.4
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
481.8
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
468.8
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
466.0
GTEX-1MCQQ-0011-R1a-SM-F341G
60-69 years, male
460.8
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
457.7
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
457.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
449.3
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
445.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
440.9
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
440.6
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
439.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
438.6
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
429.5
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
428.4
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
425.9
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
422.1
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
420.5
GTEX-11DYG-0011-R1a-SM-GI4X6
60-69 years, male
414.1
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
413.5
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
410.0
GTEX-11H98-0011-R1a-SM-GIN8O
50-59 years, male
409.3
GTEX-15EO6-0011-R1b-SM-H7OGP
50-59 years, male
407.6
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
407.4
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
395.1
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
391.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
391.4
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
388.3
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
385.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
380.3
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
374.7
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
371.1
GTEX-1POEN-0011-R1b-SM-F3K3K
30-39 years, female
370.2
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
368.4
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
368.2
GTEX-12WSA-0011-R1b-SM-GI4VI
60-69 years, male
366.9
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
355.4
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
350.7
GTEX-1OJC4-0011-R1a-SM-F2TAZ
50-59 years, female
349.6
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
349.0
GTEX-117XS-0011-R1b-SM-GJ3PQ
60-69 years, male
345.8
GTEX-13SLX-0011-R1a-SM-H6Q8N
50-59 years, female
342.0
GTEX-1LVAO-0011-R1a-SM-F649O
60-69 years, male
337.1
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
335.8
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
334.9
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
334.2
GTEX-ZZPT-0011-R1b-SM-GNINL
50-59 years, male
329.8
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
328.5
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
327.5
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
324.0
GTEX-15DYW-0011-R1a-SM-H6Q6Q
60-69 years, female
323.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
322.8
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
321.5
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
321.4
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
321.1
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
320.7
GTEX-13PVQ-0011-R1b-SM-GJ3RQ
50-59 years, male
316.2
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
315.1
GTEX-1QP6S-0011-R1b-SM-F3K59
40-49 years, male
314.7
GTEX-1JMQJ-0011-R1b-SM-F2T9P
50-59 years, male
313.7
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
311.4
GTEX-11OF3-0011-R1b-SM-H65ZT
60-69 years, male
309.6
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
309.5
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
308.4
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
304.3
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
303.8
GTEX-1KWVE-0011-R1a-SM-F649B
30-39 years, male
303.1
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
302.1
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
301.8
GTEX-1R9PO-0011-R1b-SM-F2I2G
60-69 years, female
299.9
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
298.5
GTEX-1PWST-0011-R1b-SM-F2I38
70-79 years, male
296.6
GTEX-12ZZZ-0011-R1a-SM-GIN8I
60-69 years, male
290.9
GTEX-11PRG-0011-R1b-SM-H7OHD
50-59 years, male
286.3
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
284.8
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
282.7
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
282.1
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
281.8
GTEX-1MJK2-0011-R1b-SM-F649H
50-59 years, male
281.6
GTEX-1LVA9-0011-R1b-SM-F2TB5
50-59 years, male
277.6
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
275.0
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
272.5
GTEX-1R9K4-0011-R1a-SM-F342F
60-69 years, male
269.6
GTEX-1LH75-0011-R1a-SM-F341Y
50-59 years, female
267.0
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
265.2
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
264.4
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
261.7
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
261.6
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
256.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
256.7
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
256.2
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
251.5
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
251.5
GTEX-1JMOU-0011-R1b-SM-F341B
60-69 years, female
249.1
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
246.1
GTEX-1RNSC-0011-R1b-SM-F342D
60-69 years, male
244.3
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
244.0
GTEX-14DAQ-0011-R1a-SM-G8W85
60-69 years, female
243.3
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
241.0
GTEX-ZYY3-0011-R1b-SM-GPI92
60-69 years, female
238.2
GTEX-1JMLX-0011-R1b-SM-G9ERV
50-59 years, male
237.8
GTEX-1LKK1-0011-R1b-SM-F2TAF
50-59 years, female
234.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
233.9
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
233.2
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
228.9
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
228.4
GTEX-1N2EE-0011-R1a-SM-F3K5K
60-69 years, male
225.0
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
224.7
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
220.0
GTEX-1JMQK-0011-R1a-SM-F6484
60-69 years, male
214.1
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
206.7
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
203.9
GTEX-11NV4-0011-R1a-SM-GINAK
60-69 years, male
203.2
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
199.8
GTEX-1RDX4-0011-R1a-SM-F3K5H
50-59 years, female
197.8
GTEX-1RQED-0011-R1a-SM-F3K5W
60-69 years, male
195.4
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
194.1
GTEX-1JJEA-0011-R1b-SM-F6495
60-69 years, male
191.5
GTEX-1PIIG-0011-R1a-SM-F649P
30-39 years, male
188.7
GTEX-RU72-0011-R1A-SM-HAUZG
50-59 years, female
185.2
GTEX-15SHU-0011-R1b-SM-H6Q7U
40-49 years, female
184.9
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
179.8
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
178.8
GTEX-12126-0011-R1a-SM-GJ3Q8
20-29 years, male
178.7
GTEX-1KD4Q-0011-R1a-SM-F3K4Z
40-49 years, male
176.7
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
176.4
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
176.1
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
175.0
GTEX-1LSVX-0011-R1a-SM-F3K5F
60-69 years, male
171.7
GTEX-ZYFD-0011-R1b-SM-GRR1T
50-59 years, male
171.4
GTEX-12ZZY-0011-R1a-SM-GIN9E
60-69 years, male
171.2
GTEX-14JFF-0011-R1b-SM-G8W88
60-69 years, male
169.0
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
168.4
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
167.6
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
165.9
GTEX-13VXU-0011-R1a-SM-GINAT
50-59 years, male
165.8
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
164.1
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
160.6
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
160.1
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
159.2
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
159.0
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
154.1
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
152.5
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
149.0
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
144.2
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
144.1
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
143.4
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
142.6
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
142.1
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
142.0
GTEX-1JMPZ-0011-R1b-SM-F6497
30-39 years, male
140.9
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
138.5
GTEX-14BMV-0011-R1b-SM-G9ERL
50-59 years, male
137.5
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
136.8
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
133.8
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
131.9
GTEX-1LSNL-0011-R1a-SM-F3K51
50-59 years, male
131.3
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
129.5
GTEX-ZAK1-0011-R1a-SM-GRR1R
50-59 years, female
128.8
GTEX-1192X-0011-R1b-SM-GI4VU
50-59 years, male
123.8
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
123.0
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
121.8
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
121.4
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
117.8
GTEX-1QMI2-0011-R1b-SM-F3K5Q
60-69 years, male
117.0
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
115.3
GTEX-1NV8Z-0011-R1b-SM-F647K
60-69 years, male
112.4
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
111.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
104.2
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
103.9
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
103.2
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
102.4
GTEX-1F52S-0011-R1a-SM-9OSX9
60-69 years, female
101.8
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
100.6
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
99.5
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
93.8
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
92.3
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
92.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
91.0
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
90.4
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
90.1
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
89.8
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
89.4
GTEX-1N5O9-0011-R1b-SM-F3K4W
60-69 years, male
87.5
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
85.9
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
84.1
GTEX-ZAJG-0011-R1a-SM-GQ1CV
50-59 years, female
84.0
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
83.6
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
83.3
GTEX-15RJE-0011-R1b-SM-H6Q7N
40-49 years, male
82.2
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
81.6
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
78.6
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
78.4
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
75.8
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
70.0
GTEX-1JMQL-0011-R1a-SM-F3K4U
50-59 years, female
68.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
67.1
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
65.0
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
64.7
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
63.7
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
63.6
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
62.5
GTEX-14E6C-0011-R1a-SM-G8W86
40-49 years, male
61.8
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
61.0
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
56.1
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
52.4
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
51.9
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
46.9
GTEX-1KANB-0011-R1a-SM-F3K5M
50-59 years, male
46.2
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
44.3
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
44.3
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
43.8
GTEX-1JN6P-0011-R1b-SM-G8LL3
60-69 years, male
42.8
GTEX-11TTK-0011-R1b-SM-GIN92
60-69 years, female
41.0
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
39.8
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
38.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
37.8
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
34.7
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
33.1
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
32.9
GTEX-13PLJ-0011-R1a-SM-GJ3QF
60-69 years, female
31.4
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
29.3
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
28.5
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
27.1
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
26.7
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
25.4
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
25.0
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
24.6
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
21.7
GTEX-12696-0011-R1a-SM-GHWPW
60-69 years, male
20.7
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
20.5
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
15.0
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
11.7
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
8.4
Show allShow less
HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
382.0
Pig sample
Sample description
nTPM
Subiculum nTPM: 268.4
Samples: 4
Max nTPM: 377.6
Min nTPM: 212.0
Sample A
Female
377.6
Sample B
Female
212.0
Sample C
Male
249.9
Sample D
Male
234.1
Dorsal hippocampus nTPM: 254.3
Samples: 4
Max nTPM: 266.7
Min nTPM: 239.2
Sample A
Female
262.4
Sample B
Female
239.2
Sample C
Male
266.7
Sample D
Male
248.8
Entorhinal cortex nTPM: 382.0
Samples: 4
Max nTPM: 440.4
Min nTPM: 297.5
Sample A
Female
440.4
Sample B
Female
393.1
Sample C
Male
297.5
Sample D
Male
397.1
Ventral hippocampus nTPM: 273.9
Samples: 4
Max nTPM: 375.3
Min nTPM: 178.3
Sample A
Female
290.6
Sample B
Female
178.3
Sample C
Male
375.3
Sample D
Male
251.3
HIPPOCAMPAL FORMATION - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
372.3
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 372.3
Samples: 4
Max nTPM: 411.0
Min nTPM: 333.8
Sample A
Male
369.6
Sample B
Male
374.6
Sample C
Female
333.8
Sample D
Female
411.0
Hippocampal formation nTPM: 235.5
Samples: 4
Max nTPM: 256.9
Min nTPM: 212.8
Sample A
Male
256.9
Sample B
Male
212.8
Sample C
Female
222.1
Sample D
Female
250.1
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.