We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
205.3
nTPM
Monaco:
64.6
nTPM
Schmiedel:
90.9
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
205.3
HPA sample
nTPM
gdT-cell nTPM: 145.2
Samples: 6
Max nTPM: 181.1
Min nTPM: 90.9
P10809_1007
90.9
P10809_1022
153.3
P10809_1041
181.1
P10809_1060
142.4
P10809_1077
143.9
P10809_1098
159.7
MAIT T-cell nTPM: 153.7
Samples: 6
Max nTPM: 180.0
Min nTPM: 108.7
P10809_1006
108.7
P10809_1024
133.4
P10809_1043
157.5
P10809_1062
180.0
P10809_1083
178.6
P10809_1097
163.7
Memory CD4 T-cell nTPM: 160.5
Samples: 6
Max nTPM: 189.9
Min nTPM: 106.5
P10809_1014
106.5
P10809_1026
183.5
P10809_1045
156.2
P10809_1064
179.5
P10809_1086
147.3
P10809_1113
189.9
Memory CD8 T-cell nTPM: 154.2
Samples: 5
Max nTPM: 192.1
Min nTPM: 129.0
P10809_1012
134.6
P10809_1027
148.6
P10809_1046
166.6
P10809_1065
129.0
P10809_1111
192.1
Naive CD4 T-cell nTPM: 150.7
Samples: 6
Max nTPM: 201.2
Min nTPM: 83.7
P10809_1015
83.7
P10809_1030
130.9
P10809_1049
201.2
P10809_1068
164.0
P10809_1085
161.8
P10809_1112
162.5
Naive CD8 T-cell nTPM: 136.0
Samples: 6
Max nTPM: 173.1
Min nTPM: 90.4
P10809_1016
90.4
P10809_1031
131.0
P10809_1050
138.5
P10809_1069
173.1
P10809_1087
125.8
P10809_1110
157.1
T-reg nTPM: 205.3
Samples: 6
Max nTPM: 262.4
Min nTPM: 122.2
P10809_1018
122.2
P10809_1037
161.9
P10809_1056
262.4
P10809_1075
221.2
P10809_1094
227.7
P10809_1106
236.2
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
64.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 48.8
Samples: 4
Max nTPM: 79.4
Min nTPM: 24.5
RHH5202_R3573
46.9
RHH5230_R3602
24.5
RHH5259_R3631
44.5
RHH5288_R3660
79.4
Effector memory CD8 T-cell nTPM: 40.7
Samples: 4
Max nTPM: 49.2
Min nTPM: 35.2
RHH5203_R3574
39.0
RHH5231_R3603
49.2
RHH5260_R3632
35.2
RHH5289_R3661
39.3
MAIT T-cell nTPM: 37.2
Samples: 4
Max nTPM: 52.8
Min nTPM: 28.2
RHH5233_R3605
32.3
RHH5205_R3576
28.2
RHH5262_R3634
35.5
RHH5297_R3663
52.8
Memory CD4 T-cell TFH nTPM: 64.6
Samples: 4
Max nTPM: 72.5
Min nTPM: 47.7
RHH5300_R3666
69.1
RHH5236_R3608
68.9
RHH5265_R3637
47.7
RHH5208_R3579
72.5
Memory CD4 T-cell Th1 nTPM: 50.8
Samples: 4
Max nTPM: 85.6
Min nTPM: 31.5
RHH5210_R3581
46.9
RHH5302_R3668
85.6
RHH5238_R3610
31.5
RHH5267_R3639
39.0
Memory CD4 T-cell Th1/Th17 nTPM: 50.0
Samples: 4
Max nTPM: 89.8
Min nTPM: 20.1
RHH5303_R3669
89.8
RHH5211_R3582
52.6
RHH5239_R3611
20.1
RHH5268_R3640
37.4
Memory CD4 T-cell Th17 nTPM: 36.0
Samples: 4
Max nTPM: 58.1
Min nTPM: 21.7
RHH5304_R3670
41.6
RHH5212_R3583
58.1
RHH5240_R3612
21.7
RHH5269_R3641
22.7
Memory CD4 T-cell Th2 nTPM: 50.3
Samples: 4
Max nTPM: 60.6
Min nTPM: 37.3
RHH5305_R3671
55.1
RHH5213_R3584
48.1
RHH5241_R3613
60.6
RHH5270_R3642
37.3
Naive CD4 T-cell nTPM: 54.0
Samples: 4
Max nTPM: 74.1
Min nTPM: 42.8
RHH5306_R3672
50.0
RHH5214_R3585
74.1
RHH5242_R3614
48.9
RHH5271_R3643
42.8
Naive CD8 T-cell nTPM: 41.8
Samples: 4
Max nTPM: 60.9
Min nTPM: 20.0
RHH5201_R3572
43.4
RHH5229_R3601
20.0
RHH5258_R3630
60.9
RHH5287_R3659
42.8
Non-Vd2 gdTCR nTPM: 51.6
Samples: 4
Max nTPM: 84.7
Min nTPM: 28.3
RHH5235_R3607
28.3
RHH5264_R3636
53.7
RHH5207_R3578
39.5
RHH5299_R3665
84.7
T-reg nTPM: 55.5
Samples: 4
Max nTPM: 68.0
Min nTPM: 33.8
RHH5301_R3667
67.3
RHH5237_R3609
68.0
RHH5266_R3638
33.8
RHH5209_R3580
52.7
Terminal effector memory CD4 T-cell nTPM: 48.9
Samples: 2
Max nTPM: 67.0
Min nTPM: 30.7
RHH5243_R3615
30.7
RHH5272_R3644
67.0
Terminal effector memory CD8 T-cell nTPM: 56.1
Samples: 4
Max nTPM: 90.4
Min nTPM: 32.2
RHH5232_R3604
45.9
RHH5204_R3575
90.4
RHH5261_R3633
32.2
RHH5296_R3662
55.9
Vd2 gdTCR nTPM: 49.5
Samples: 4
Max nTPM: 68.8
Min nTPM: 31.9
RHH5234_R3606
34.6
RHH5206_R3577
62.6
RHH5263_R3635
31.9
RHH5298_R3664
68.8
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
