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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:134.8 nTPM
HPA Brain:280.9 nTPM
GTEx:134.8 nTPM
FANTOM5:277.0 Scaled Tags Per Million
Pig:246.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

280.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 242.3
2048 Male, age 55, midline 282.3
1981 Female, age 72, midline 273.5
2194 Female, age 79, both hemispheres 233.2
2816 Male, age 47, midline 219.7
2565 Male, age 75, midline 202.6
Cervical spinal cord, dorsal horn
nTPM: 269.2
2296 Male, age 66, both hemispheres 334.5
2173 Female, age 72, unknown 331.1
2069 Male, age 47, both hemispheres 277.4
1877 Male, age 55, unknown 235.6
2297 Male, age 75, both hemispheres 227.7
2721 Male, age 90, both hemispheres 208.9
Cervical spinal cord, ventral horn
nTPM: 280.9
2480 Male, age 75, both hemispheres 315.3
2809 Male, age 90, both hemispheres 306.9
2295 Male, age 66, both hemispheres 287.8
2098 Female, age 72, unknown 283.2
2068 Male, age 55, unknown 261.3
2820 Female, age 79, both hemispheres 230.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

134.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 134.8
Samples: 159

Max nTPM: 215.8
Min nTPM: 76.7
Std nTPM: 27.1
Median nTPM: 133.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 215.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 206.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 206.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 198.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 193.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 192.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 188.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 187.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 185.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 180.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 174.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 173.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 171.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 170.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 170.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 168.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 168.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 167.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 166.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 165.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 163.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 162.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 160.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 160.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 159.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 159.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 158.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 156.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 156.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 156.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 155.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 155.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 153.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 153.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 153.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 153.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 152.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 151.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 151.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 151.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 151.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 150.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 150.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 149.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 148.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 148.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 148.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 148.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 147.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 147.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 146.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 145.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 145.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 145.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 143.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 143.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 142.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 142.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 142.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 141.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 141.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 141.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 141.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 141.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 140.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 139.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 139.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 138.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 138.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 138.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 138.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 137.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 137.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 137.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 136.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 135.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 134.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 134.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 133.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 133.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 132.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 132.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 132.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 132.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 132.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 131.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 130.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 130.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 130.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 130.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 129.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 129.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 128.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 127.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 127.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 127.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 126.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 126.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 125.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 125.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 125.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 125.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 124.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 124.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 123.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 123.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 123.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 122.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 122.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 122.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 121.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 121.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 121.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 121.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 120.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 119.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 119.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 119.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 119.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 119.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 118.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 118.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 118.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 117.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 115.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 114.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 113.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 112.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 111.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 110.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 110.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 109.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 108.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 108.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 108.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 106.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 106.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 106.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 103.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 102.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 102.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 101.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 99.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 99.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 99.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 98.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 96.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 92.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 91.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 88.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 88.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 87.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 84.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 83.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 82.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 82.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 82.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 79.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 76.7
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

277.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 277.0
FF:10181-103D1 60 years, female 327.3
FF:10159-103A6 76 years, female 226.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

246.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 224.5
Samples: 4

Max nTPM: 252.1
Min nTPM: 208.1
Sample A Female 208.1
Sample B Female 252.1
Sample C Male 222.6
Sample D Male 215.1
Ventral spinal cord
nTPM: 246.1
Samples: 4

Max nTPM: 266.7
Min nTPM: 228.4
Sample A Female 250.6
Sample B Female 238.7
Sample C Male 228.4
Sample D Male 266.7

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