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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
319.4
nTPM
FANTOM5:
260.2
Scaled Tags Per Million
Pig:
210.6
nTPM
Allen mouse:
5.6
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
319.4
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 302.1
2188
Female, age 91, both hemispheres
362.9
2301
Female, age 85, both hemispheres
334.5
2090
Male, age 80, both hemispheres
303.2
1984
Male, age 76, both hemispheres
208.0
Dorsal cochlear nucleus nTPM: 279.4
2187
Female, age 91, both hemispheres
310.1
2378
Male, age 80, both hemispheres
303.1
2802
Male, age 74, right hemisphere
285.1
2058
Male, age 76, both hemispheres
252.3
2370
Male, age 61, both hemispheres
246.3
Dorsal tegmental nucleus nTPM: 275.0
2326
Male, age 74, both hemispheres
308.5
2083
Male, age 80, both hemispheres
280.6
1936
Male, age 76, left hemisphere
256.0
2358
Male, age 61, both hemispheres
254.8
Dorsolateral tegmental area nTPM: 264.5
2751
Female, age 85, both hemispheres
311.2
2654
Male, age 80, both hemispheres
305.5
2337
Male, age 61, both hemispheres
274.2
2360
Male, age 74, both hemispheres
238.2
2141
Male, age 76, both hemispheres
193.6
Kolliker-Fuse nucleus nTPM: 298.0
2793
Female, age 91, left hemisphere
395.8
2163
Male, age 80, both hemispheres
267.1
2315
Male, age 76, right hemisphere
231.2
Lateral lemniscal nuclei nTPM: 296.0
2320
Female, age 91, left hemisphere
348.2
2036
Male, age 80, both hemispheres
331.2
2169
Male, age 76, both hemispheres
289.7
2453
Male, age 74, right hemisphere
257.6
2746
Female, age 85, left hemisphere
253.4
Lateral parabrachial nucleus nTPM: 295.9
2792
Male, age 76, both hemispheres
391.4
2013
Male, age 80, both hemispheres
312.5
2139
Female, age 85, right hemisphere
249.8
2790
Male, age 61, both hemispheres
230.0
Lateral vestibular nucleus nTPM: 275.4
2311
Male, age 80, both hemispheres
297.4
2184
Male, age 76, both hemispheres
253.3
Locus coeruleus nTPM: 212.0
2720
Male, age 74, both hemispheres
282.4
2788
Male, age 74, unknown
234.9
2162
Male, age 80, both hemispheres
213.3
2014
Male, age 55, unknown
202.6
2123
Female, age 91, both hemispheres
199.6
2317
Female, age 72, unknown
185.8
1980
Male, age 76, both hemispheres
165.1
Medial parabrachial nucleus nTPM: 284.5
2854
Male, age 80, both hemispheres
331.8
2170
Female, age 91, both hemispheres
323.3
2786
Male, age 76, both hemispheres
277.6
2463
Female, age 85, right hemisphere
261.9
2156
Male, age 61, both hemispheres
228.1
Medial periolivary nuclei nTPM: 282.1
2458
Female, age 91, both hemispheres
326.4
2081
Male, age 80, both hemispheres
303.8
2791
Male, age 74, right hemisphere
271.4
2063
Male, age 76, both hemispheres
255.7
2171
Female, age 85, both hemispheres
253.0
Motor facial nucleus nTPM: 288.4
2697
Female, age 85, both hemispheres
356.7
2365
Male, age 74, right hemisphere
305.1
2795
Female, age 91, both hemispheres
282.7
2327
Male, age 80, both hemispheres
272.1
2126
Male, age 61, both hemispheres
266.6
2062
Male, age 76, both hemispheres
247.0
Motor trigeminal nucleus nTPM: 267.7
2321
Female, age 91, both hemispheres
301.1
2560
Male, age 74, both hemispheres
278.2
2309
Male, age 76, both hemispheres
268.2
2079
Male, age 80, both hemispheres
256.6
2335
Male, age 61, both hemispheres
234.5
Nuclei of the trapezoid body nTPM: 267.7
2166
Male, age 80, both hemispheres
301.2
2368
Female, age 91, both hemispheres
277.1
2159
Male, age 61, both hemispheres
266.0
1983
Male, age 76, both hemispheres
255.8
2735
Female, age 85, both hemispheres
238.7
Nucleus raphe magnus nTPM: 274.7
2459
Female, age 91, both hemispheres
343.5
2328
Male, age 80, both hemispheres
297.6
2051
Male, age 76, both hemispheres
288.4
2455
Male, age 74, both hemispheres
256.4
2172
Female, age 85, both hemispheres
239.2
2160
Male, age 61, both hemispheres
223.1
Paramedian reticular nucleus nTPM: 298.7
2052
Male, age 76, both hemispheres
374.6
2050
Female, age 85, both hemispheres
306.6
2313
Male, age 61, both hemispheres
258.3
2057
Male, age 80, both hemispheres
255.5
Pedunculopontine tegmental nucleus nTPM: 268.5
2338
Male, age 61, both hemispheres
296.4
2334
Male, age 80, both hemispheres
283.3
1921
Female, age 85, both hemispheres
225.6
Pontine nuclei nTPM: 300.8
2319
Female, age 91, both hemispheres
373.4
2454
Male, age 74, left hemisphere
345.4
1863
Male, age 55, unknown
310.2
1968
Male, age 76, left hemisphere
292.0
2109
Female, age 72, unknown
286.8
2115
Male, age 80, left hemisphere
279.3
2787
Female, age 85, both hemispheres
265.5
2727
Male, age 61, right hemisphere
253.9
Pontine raphe nucleus nTPM: 238.0
2122
Female, age 85, midline
265.8
2853
Male, age 76, midline
210.2
Posteroventral cochlear nucleus nTPM: 319.4
2341
Male, age 80, both hemispheres
417.4
2135
Female, age 91, both hemispheres
386.4
2371
Male, age 61, both hemispheres
283.5
2070
Male, age 76, both hemispheres
261.1
2752
Female, age 85, both hemispheres
248.4
Principal sensory trigeminal nucleus nTPM: 276.6
2367
Female, age 91, left hemisphere
361.3
2324
Male, age 76, both hemispheres
269.3
2008
Male, age 80, left hemisphere
259.6
2158
Male, age 61, both hemispheres
216.3
Reticular pontine nucleus, caudal nTPM: 297.0
2457
Female, age 91, both hemispheres
356.0
2092
Male, age 76, both hemispheres
292.4
2559
Male, age 74, both hemispheres
292.3
2332
Male, age 80, right hemisphere
247.3
Reticular pontine nucleus, oral nTPM: 315.7
2366
Female, age 91, both hemispheres
404.6
1939
Male, age 80, both hemispheres
304.7
2012
Female, age 85, both hemispheres
296.1
2167
Male, age 76, both hemispheres
289.1
2361
Male, age 74, both hemispheres
284.1
Reticulotegmental nucleus nTPM: 276.4
2322
Female, age 91, both hemispheres
328.7
2452
Male, age 74, both hemispheres
283.3
2333
Male, age 80, both hemispheres
266.6
2325
Male, age 76, both hemispheres
227.1
Spinal trigeminal nucleus, oral nTPM: 240.7
2164
Male, age 80, both hemispheres
264.0
1978
Male, age 76, both hemispheres
239.1
2737
Female, age 85, both hemispheres
219.1
Subcoeruleus area nTPM: 282.8
2369
Female, age 85, left hemisphere
354.7
1958
Male, age 80, both hemispheres
292.1
2451
Male, age 74, both hemispheres
272.2
2323
Female, age 91, left hemisphere
250.1
2089
Male, age 76, left hemisphere
245.1
Superior olive nTPM: 305.9
2020
Male, age 76, both hemispheres
348.7
2561
Female, age 91, both hemispheres
306.3
2329
Male, age 80, right hemisphere
300.0
2364
Male, age 74, right hemisphere
289.6
1875
Female, age 85, both hemispheres
285.0
Ventral periolivary nuclei nTPM: 288.1
2023
Male, age 76, both hemispheres
359.1
2794
Female, age 91, left hemisphere
268.6
2130
Female, age 85, both hemispheres
267.5
2165
Male, age 80, both hemispheres
257.1
Ventrolateral tegmental area, A5 NE cell group nTPM: 299.4
2840
Female, age 85, both hemispheres
329.0
2456
Female, age 91, both hemispheres
317.3
1959
Male, age 76, both hemispheres
304.7
2161
Male, age 80, both hemispheres
300.5
2359
Male, age 61, both hemispheres
295.1
2449
Male, age 74, both hemispheres
250.0
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
210.6
Pig sample
Sample description
nTPM
Pons nTPM: 210.6
Samples: 4
Max nTPM: 249.0
Min nTPM: 163.0
Sample A
Female
203.7
Sample B
Female
163.0
Sample C
Male
226.7
Sample D
Male
249.0
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
