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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:125.7 nTPM
GTEx:125.7 nTPM
FANTOM5:212.2 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA019006Antibody HPA020595
Squamous epithelial cells LowNot detected




VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

125.7
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 125.7
Samples: 170

Max nTPM: 326.5
Min nTPM: 54.2
Std nTPM: 42.5
Median nTPM: 118.5
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 326.5
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 304.9
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 301.9
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 242.5
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 220.5
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 219.7
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 210.8
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 208.5
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 206.5
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 204.4
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 199.8
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 197.2
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 188.5
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 176.1
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 173.2
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 172.6
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 170.9
GTEX-S341-1226-SM-4AD5S 40-49 years, female 168.9
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 168.4
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 165.9
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 164.8
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 162.5
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 162.4
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 161.4
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 161.2
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 159.2
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 158.4
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 158.2
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 157.6
GTEX-11I78-2026-SM-5987C 50-59 years, female 156.7
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 155.5
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 154.3
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 154.2
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 152.8
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 152.0
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 152.0
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 150.9
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 150.9
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 149.6
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 147.1
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 145.9
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 145.4
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 143.5
GTEX-1C475-0526-SM-793AC 40-49 years, female 142.9
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 140.9
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 140.6
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 140.1
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 140.1
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 139.6
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 137.9
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 137.4
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 136.3
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 135.6
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 134.7
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 134.5
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 134.5
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 133.0
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 132.5
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 132.0
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 131.0
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 130.7
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 129.8
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 129.5
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 128.2
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 126.7
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 126.6
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 125.9
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 125.7
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 125.5
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 125.2
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 125.0
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 124.5
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 123.4
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 123.4
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 123.3
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 122.8
GTEX-16NPV-2526-SM-6M483 50-59 years, female 122.8
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 122.8
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 122.6
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 121.6
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 121.5
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 121.3
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 120.8
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 120.8
GTEX-14PKU-1326-SM-6871B 40-49 years, female 118.9
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 118.2
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 117.7
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 117.1
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 116.8
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 116.7
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 116.7
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 116.5
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 116.3
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 114.8
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 114.4
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 113.1
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 113.0
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 112.8
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 112.6
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 111.7
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 111.0
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 110.3
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 110.2
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 109.8
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 109.6
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 108.7
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 108.6
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 108.1
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 107.7
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 107.3
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 107.1
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 106.9
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 106.4
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 106.2
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 104.9
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 104.0
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 102.5
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 101.4
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 101.0
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 100.5
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 100.2
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 100.1
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 100.1
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 99.1
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 98.6
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 98.6
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 98.1
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 97.4
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 96.7
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 95.9
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 95.9
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 95.0
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 94.8
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 94.5
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 94.0
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 93.6
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 93.5
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 93.2
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 92.7
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 92.4
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 92.3
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 91.1
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 87.3
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 87.2
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 87.2
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 87.0
GTEX-QCQG-1226-SM-48U23 50-59 years, female 86.1
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 85.4
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 85.4
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 85.1
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 84.9
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 84.2
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 84.0
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 83.4
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 81.7
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 80.3
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 80.1
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 79.3
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 78.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 77.5
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 76.2
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 75.5
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 73.0
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 71.0
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 69.9
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 69.6
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 69.4
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 65.5
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 61.3
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 54.2
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

212.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 212.2
FF:10204-103F6 68 years, female 212.2

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