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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
34.4
nTPM
HPA Brain:
58.0
nTPM
GTEx:
34.4
nTPM
FANTOM5:
55.1
Scaled Tags Per Million
Pig:
20.6
nTPM
Mouse:
104.5
nTPM
Allen mouse:
4.9
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
58.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 48.8
2666
Male, age 74, left hemisphere
61.0
2019
Male, age 18, unknown
59.3
1827
Male, age 72, unknown
57.1
2411
Female, age 72, unknown
53.5
2219
Male, age 76, both hemispheres
49.0
2586
Male, age 75, left hemisphere
42.3
1833
Male, age 53, unknown
42.2
2828
Female, age 72, unknown
41.7
1870
Female, age 42, unknown
41.5
1830
Male, age 51, unknown
40.1
Dorsal raphe nucleus nTPM: 51.4
2750
Male, age 76, both hemispheres
59.0
2298
Female, age 72, unknown
56.7
2047
Male, age 72, unknown
55.3
1828
Male, age 53, unknown
49.9
2016
Female, age 72, unknown
36.1
Inferior colliculus nTPM: 50.5
2097
Female, age 72, unknown
63.0
1890
Male, age 53, unknown
48.2
1848
Female, age 42, unknown
47.2
2849
Male, age 72, unknown
43.5
Median raphe nucleus nTPM: 58.0
2220
Male, age 76, midline
58.0
Periaquaductal grey, anterior nTPM: 54.1
2502
Female, age 75, unknown
56.0
1795
Male, age 51, unknown
54.1
1947
Male, age 18, unknown
52.2
Periaquaductal grey, dorsal nTPM: 43.5
2464
Female, age 72, unknown
45.6
2850
Male, age 76, both hemispheres
44.4
1840
Male, age 53, unknown
42.6
1831
Male, age 72, unknown
41.5
Periaquaductal grey, lateral nTPM: 41.8
2272
Male, age 74, both hemispheres
43.0
2140
Male, age 76, both hemispheres
41.5
2053
Male, age 18, unknown
41.0
Pretectal area nTPM: 57.2
1816
Male, age 51, unknown
77.4
2007
Male, age 72, unknown
76.7
1944
Female, age 72, unknown
75.8
1817
Female, age 42, unknown
67.7
1815
Male, age 53, unknown
60.7
2224
Female, age 72, unknown
53.8
2407
Male, age 75, both hemispheres
51.2
2316
Male, age 76, right hemisphere
44.5
2825
Male, age 18, unknown
43.1
2667
Female, age 75, unknown
40.3
2273
Male, age 74, both hemispheres
38.7
Red nucleus nTPM: 40.2
2785
Male, age 18, unknown
53.8
1821
Female, age 72, unknown
47.7
2823
Male, age 76, right hemisphere
44.6
2588
Male, age 74, left hemisphere
43.0
2584
Male, age 75, left hemisphere
42.4
1954
Female, age 42, unknown
40.2
2227
Male, age 72, unknown
37.5
2725
Female, age 75, unknown
37.4
2769
Male, age 72, unknown
36.3
2503
Female, age 72, unknown
34.3
1865
Male, age 51, unknown
34.2
1904
Male, age 53, unknown
31.5
Substantia nigra nTPM: 54.9
1941
Male, age 53, unknown
75.3
1916
Female, age 42, unknown
67.9
1889
Female, age 72, unknown
65.6
2241
Male, age 72, unknown
63.8
1851
Male, age 51, unknown
57.9
2409
Female, age 72, unknown
55.9
2590
Female, age 75, unknown
48.2
2583
Male, age 75, right hemisphere
42.7
2699
Male, age 18, unknown
39.8
2665
Male, age 74, both hemispheres
32.3
Superior colliculus nTPM: 51.9
2668
Female, age 75, unknown
78.6
2087
Female, age 72, unknown
67.3
1895
Male, age 76, right hemisphere
55.2
2261
Male, age 18, unknown
55.2
1796
Male, age 53, unknown
53.2
1839
Male, age 51, unknown
48.4
2587
Male, age 74, left hemisphere
46.0
2664
Male, age 75, both hemispheres
44.4
1913
Female, age 42, unknown
37.9
1995
Male, age 72, unknown
32.8
Ventral tegmental area nTPM: 47.9
2410
Female, age 72, unknown
54.8
1915
Female, age 42, unknown
54.5
2218
Male, age 76, both hemispheres
49.6
1942
Male, age 51, unknown
45.4
2021
Male, age 53, unknown
45.0
2223
Female, age 72, unknown
37.9
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
34.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 34.4
Samples: 139
Max nTPM: 140.4
Min nTPM: 10.0
Std nTPM: 18.9
Median nTPM: 30.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
140.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
104.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
83.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
83.3
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
76.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
75.2
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
73.8
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
67.3
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
63.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
63.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
61.6
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
61.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
56.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
55.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
54.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
54.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
54.0
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
52.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
52.1
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
51.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
50.8
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
50.4
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
49.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
48.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
47.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
47.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
46.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
46.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
45.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
45.1
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
44.8
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
44.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
43.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
43.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
42.9
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
42.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
42.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
41.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
41.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
39.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
39.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
39.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
39.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
37.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
37.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
37.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
37.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
37.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
37.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
36.4
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
36.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
35.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
35.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
34.7
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
34.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
34.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
34.4
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
34.3
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
34.2
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
33.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
33.8
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
32.9
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
32.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
32.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
31.8
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
31.4
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
31.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
31.3
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
30.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
30.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
29.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
29.6
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
29.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
29.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
29.0
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
29.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
27.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
27.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
26.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
26.4
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
26.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
25.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
25.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
24.9
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
24.8
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
24.5
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
24.4
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
24.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
24.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
24.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
23.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
23.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
23.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
23.1
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
23.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
23.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
22.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
22.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
22.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
22.3
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
22.2
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
22.2
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
22.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
22.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
22.0
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
21.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
20.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
20.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
20.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
20.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
19.9
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
19.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
19.7
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
18.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
18.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
18.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
18.3
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
18.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
17.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
17.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
17.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
17.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
17.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
17.2
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
16.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
16.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
16.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
14.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
14.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
14.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
14.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
13.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
13.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
13.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
13.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
13.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
13.3
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
12.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
10.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
104.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 104.5
Samples: 4
Max nTPM: 105.7
Min nTPM: 101.7
Sample A
Male
101.7
Sample B
Male
105.2
Sample C
Female
105.4
Sample D
Female
105.7
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.