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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
311.3
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 124.5
2301
Female, age 85, both hemispheres
163.5
1984
Male, age 76, both hemispheres
139.8
2188
Female, age 91, both hemispheres
127.2
2090
Male, age 80, both hemispheres
67.4
Dorsal cochlear nucleus nTPM: 66.4
2187
Female, age 91, both hemispheres
100.7
2058
Male, age 76, both hemispheres
86.6
2370
Male, age 61, both hemispheres
70.0
2378
Male, age 80, both hemispheres
44.0
2802
Male, age 74, right hemisphere
30.8
Dorsal tegmental nucleus nTPM: 86.4
1936
Male, age 76, left hemisphere
105.4
2358
Male, age 61, both hemispheres
88.1
2083
Male, age 80, both hemispheres
83.1
2326
Male, age 74, both hemispheres
68.8
Dorsolateral tegmental area nTPM: 100.2
2141
Male, age 76, both hemispheres
158.0
2751
Female, age 85, both hemispheres
150.8
2654
Male, age 80, both hemispheres
80.3
2360
Male, age 74, both hemispheres
74.7
2337
Male, age 61, both hemispheres
37.4
Kolliker-Fuse nucleus nTPM: 106.8
2793
Female, age 91, left hemisphere
143.4
2315
Male, age 76, right hemisphere
100.8
2163
Male, age 80, both hemispheres
76.1
Lateral lemniscal nuclei nTPM: 245.5
2453
Male, age 74, right hemisphere
301.7
2169
Male, age 76, both hemispheres
298.3
2036
Male, age 80, both hemispheres
250.2
2746
Female, age 85, left hemisphere
193.8
2320
Female, age 91, left hemisphere
183.6
Lateral parabrachial nucleus nTPM: 136.1
2139
Female, age 85, right hemisphere
246.3
2013
Male, age 80, both hemispheres
129.3
2790
Male, age 61, both hemispheres
116.5
2792
Male, age 76, both hemispheres
52.4
Lateral vestibular nucleus nTPM: 71.6
2184
Male, age 76, both hemispheres
73.8
2311
Male, age 80, both hemispheres
69.3
Locus coeruleus nTPM: 281.5
2720
Male, age 74, both hemispheres
465.7
2123
Female, age 91, both hemispheres
344.1
2014
Male, age 55, unknown
297.0
2788
Male, age 74, unknown
251.8
2317
Female, age 72, unknown
229.5
2162
Male, age 80, both hemispheres
203.1
1980
Male, age 76, both hemispheres
179.2
Medial parabrachial nucleus nTPM: 114.4
2854
Male, age 80, both hemispheres
155.6
2463
Female, age 85, right hemisphere
144.6
2156
Male, age 61, both hemispheres
102.6
2786
Male, age 76, both hemispheres
87.6
2170
Female, age 91, both hemispheres
81.6
Medial periolivary nuclei nTPM: 220.7
2171
Female, age 85, both hemispheres
325.6
2063
Male, age 76, both hemispheres
323.9
2791
Male, age 74, right hemisphere
177.7
2458
Female, age 91, both hemispheres
151.0
2081
Male, age 80, both hemispheres
125.3
Motor facial nucleus nTPM: 235.4
2062
Male, age 76, both hemispheres
337.6
2327
Male, age 80, both hemispheres
334.0
2697
Female, age 85, both hemispheres
249.4
2365
Male, age 74, right hemisphere
244.3
2795
Female, age 91, both hemispheres
154.0
2126
Male, age 61, both hemispheres
93.0
Motor trigeminal nucleus nTPM: 144.6
2079
Male, age 80, both hemispheres
219.3
2321
Female, age 91, both hemispheres
151.8
2560
Male, age 74, both hemispheres
144.7
2335
Male, age 61, both hemispheres
112.9
2309
Male, age 76, both hemispheres
94.2
Nuclei of the trapezoid body nTPM: 290.9
2159
Male, age 61, both hemispheres
397.7
2735
Female, age 85, both hemispheres
358.2
1983
Male, age 76, both hemispheres
291.1
2166
Male, age 80, both hemispheres
219.3
2368
Female, age 91, both hemispheres
188.2
Nucleus raphe magnus nTPM: 311.3
2172
Female, age 85, both hemispheres
412.5
2455
Male, age 74, both hemispheres
402.4
2160
Male, age 61, both hemispheres
376.8
2328
Male, age 80, both hemispheres
263.5
2459
Female, age 91, both hemispheres
215.9
2051
Male, age 76, both hemispheres
196.8
Paramedian reticular nucleus nTPM: 144.8
2050
Female, age 85, both hemispheres
273.3
2313
Male, age 61, both hemispheres
132.7
2052
Male, age 76, both hemispheres
90.9
2057
Male, age 80, both hemispheres
82.3
Pedunculopontine tegmental nucleus nTPM: 126.2
2334
Male, age 80, both hemispheres
133.0
1921
Female, age 85, both hemispheres
132.4
2338
Male, age 61, both hemispheres
113.2
Pontine nuclei nTPM: 246.2
2109
Female, age 72, unknown
328.6
2727
Male, age 61, right hemisphere
321.9
1863
Male, age 55, unknown
289.2
2787
Female, age 85, both hemispheres
277.0
1968
Male, age 76, left hemisphere
247.6
2454
Male, age 74, left hemisphere
233.5
2115
Male, age 80, left hemisphere
141.0
2319
Female, age 91, both hemispheres
130.8
Pontine raphe nucleus nTPM: 269.3
2122
Female, age 85, midline
285.2
2853
Male, age 76, midline
253.5
Posteroventral cochlear nucleus nTPM: 70.4
2752
Female, age 85, both hemispheres
156.0
2070
Male, age 76, both hemispheres
109.2
2371
Male, age 61, both hemispheres
55.8
2341
Male, age 80, both hemispheres
16.4
2135
Female, age 91, both hemispheres
14.8
Principal sensory trigeminal nucleus nTPM: 203.2
2158
Male, age 61, both hemispheres
338.9
2008
Male, age 80, left hemisphere
256.2
2367
Female, age 91, left hemisphere
152.8
2324
Male, age 76, both hemispheres
64.7
Reticular pontine nucleus, caudal nTPM: 184.6
2332
Male, age 80, right hemisphere
296.8
2092
Male, age 76, both hemispheres
212.1
2457
Female, age 91, both hemispheres
167.9
2559
Male, age 74, both hemispheres
61.6
Reticular pontine nucleus, oral nTPM: 196.7
2361
Male, age 74, both hemispheres
271.0
2012
Female, age 85, both hemispheres
239.9
2167
Male, age 76, both hemispheres
187.3
1939
Male, age 80, both hemispheres
143.0
2366
Female, age 91, both hemispheres
142.5
Reticulotegmental nucleus nTPM: 167.1
2325
Male, age 76, both hemispheres
234.3
2333
Male, age 80, both hemispheres
171.0
2322
Female, age 91, both hemispheres
148.5
2452
Male, age 74, both hemispheres
114.6
Spinal trigeminal nucleus, oral nTPM: 109.8
1978
Male, age 76, both hemispheres
142.7
2737
Female, age 85, both hemispheres
125.0
2164
Male, age 80, both hemispheres
61.8
Subcoeruleus area nTPM: 154.6
2089
Male, age 76, left hemisphere
198.8
1958
Male, age 80, both hemispheres
176.9
2323
Female, age 91, left hemisphere
168.9
2369
Female, age 85, left hemisphere
142.2
2451
Male, age 74, both hemispheres
86.2
Superior olive nTPM: 231.1
1875
Female, age 85, both hemispheres
320.1
2329
Male, age 80, right hemisphere
235.0
2020
Male, age 76, both hemispheres
214.2
2364
Male, age 74, right hemisphere
205.1
2561
Female, age 91, both hemispheres
181.1
Ventral periolivary nuclei nTPM: 282.8
2130
Female, age 85, both hemispheres
373.3
2165
Male, age 80, both hemispheres
292.5
2794
Female, age 91, left hemisphere
255.3
2023
Male, age 76, both hemispheres
210.1
Ventrolateral tegmental area, A5 NE cell group nTPM: 181.5
2449
Male, age 74, both hemispheres
306.1
1959
Male, age 76, both hemispheres
230.6
2161
Male, age 80, both hemispheres
189.4
2456
Female, age 91, both hemispheres
123.9
2359
Male, age 61, both hemispheres
122.4
2840
Female, age 85, both hemispheres
116.5
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
250.3
Pig sample
Sample description
nTPM
Pons nTPM: 250.3
Samples: 4
Max nTPM: 452.1
Min nTPM: 174.1
Sample A
Female
452.1
Sample B
Female
190.9
Sample C
Male
174.1
Sample D
Male
184.2
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.