MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.2 nTPM
HPA Brain:89.0 nTPM
GTEx:40.2 nTPM
FANTOM5:75.4 Scaled Tags Per Million
Pig:93.0 nTPM
Mouse:75.8 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 89.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81.8
2219 Male, age 76, both hemispheres 114.8
2586 Male, age 75, left hemisphere 103.4
2019 Male, age 18, unknown 87.4
1827 Male, age 72, unknown 87.2
2666 Male, age 74, left hemisphere 75.8
2411 Female, age 72, unknown 75.6
1833 Male, age 53, unknown 73.6
1830 Male, age 51, unknown 69.0
2828 Female, age 72, unknown 66.1
1870 Female, age 42, unknown 65.2
Dorsal raphe nucleus
nTPM: 72.4
2750 Male, age 76, both hemispheres 81.6
2298 Female, age 72, unknown 79.9
2047 Male, age 72, unknown 73.6
1828 Male, age 53, unknown 71.3
2016 Female, age 72, unknown 55.6
Inferior colliculus
nTPM: 70.2
2849 Male, age 72, unknown 74.1
1890 Male, age 53, unknown 71.2
2097 Female, age 72, unknown 70.8
1848 Female, age 42, unknown 64.9
Median raphe nucleus
nTPM: 79.9
2220 Male, age 76, midline 79.9
Periaquaductal grey, anterior
nTPM: 89.0
2502 Female, age 75, unknown 98.2
1947 Male, age 18, unknown 88.2
1795 Male, age 51, unknown 80.5
Periaquaductal grey, dorsal
nTPM: 60.7
1840 Male, age 53, unknown 66.0
2464 Female, age 72, unknown 64.2
1831 Male, age 72, unknown 60.0
2850 Male, age 76, both hemispheres 52.7
Periaquaductal grey, lateral
nTPM: 55.4
2053 Male, age 18, unknown 60.0
2140 Male, age 76, both hemispheres 54.1
2272 Male, age 74, both hemispheres 52.3
Pretectal area
nTPM: 80.5
1816 Male, age 51, unknown 110.5
2007 Male, age 72, unknown 109.8
1817 Female, age 42, unknown 100.0
1944 Female, age 72, unknown 94.3
1815 Male, age 53, unknown 85.4
2407 Male, age 75, both hemispheres 76.8
2825 Male, age 18, unknown 71.4
2224 Female, age 72, unknown 69.2
2316 Male, age 76, right hemisphere 64.9
2667 Female, age 75, unknown 56.1
2273 Male, age 74, both hemispheres 46.9
Red nucleus
nTPM: 76.7
2584 Male, age 75, left hemisphere 106.6
2725 Female, age 75, unknown 89.8
2588 Male, age 74, left hemisphere 87.2
2785 Male, age 18, unknown 81.7
2823 Male, age 76, right hemisphere 77.5
1904 Male, age 53, unknown 73.4
1865 Male, age 51, unknown 71.5
1821 Female, age 72, unknown 70.4
2227 Male, age 72, unknown 68.8
2503 Female, age 72, unknown 68.7
2769 Male, age 72, unknown 67.5
1954 Female, age 42, unknown 57.2
Substantia nigra
nTPM: 87.1
1916 Female, age 42, unknown 110.7
1941 Male, age 53, unknown 100.0
1851 Male, age 51, unknown 98.1
1889 Female, age 72, unknown 92.1
2665 Male, age 74, both hemispheres 87.0
2241 Male, age 72, unknown 83.2
2583 Male, age 75, right hemisphere 81.8
2409 Female, age 72, unknown 75.9
2699 Male, age 18, unknown 74.0
2590 Female, age 75, unknown 68.3
Superior colliculus
nTPM: 80.9
2668 Female, age 75, unknown 106.3
2664 Male, age 75, both hemispheres 96.8
2087 Female, age 72, unknown 90.8
1895 Male, age 76, right hemisphere 83.9
1796 Male, age 53, unknown 81.6
2261 Male, age 18, unknown 80.4
2587 Male, age 74, left hemisphere 69.7
1913 Female, age 42, unknown 69.0
1839 Male, age 51, unknown 68.1
1995 Male, age 72, unknown 62.1
Ventral tegmental area
nTPM: 81.1
2218 Male, age 76, both hemispheres 93.7
2410 Female, age 72, unknown 87.7
1915 Female, age 42, unknown 82.0
2223 Female, age 72, unknown 80.3
1942 Male, age 51, unknown 79.5
2021 Male, age 53, unknown 63.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 40.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.2
Samples: 139

Max nTPM: 134.7
Min nTPM: 6.7
Std nTPM: 23.6
Median nTPM: 34.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 134.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 129.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 126.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 108.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 88.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 84.5
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 81.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 80.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 78.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 76.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 75.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 75.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 75.4
FF:10158-103A5 76 years, female 75.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 93.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 74.5
Samples: 4

Max nTPM: 101.1
Min nTPM: 50.4
Sample A Female 101.1
Sample B Female 50.4
Sample C Male 79.1
Sample D Male 67.3
Midbrain
nTPM: 93.0
Samples: 4

Max nTPM: 111.1
Min nTPM: 71.5
Sample A Female 89.7
Sample B Female 71.5
Sample C Male 111.1
Sample D Male 99.8
Periaqueductal gray
nTPM: 59.3
Samples: 3

Max nTPM: 65.0
Min nTPM: 51.3
Sample B Female 65.0
Sample C Male 61.6
Sample D Male 51.3
Superior colliculi
nTPM: 92.2
Samples: 4

Max nTPM: 110.7
Min nTPM: 59.4
Sample A Female 109.6
Sample B Female 59.4
Sample C Male 110.7
Sample D Male 89.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 75.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 75.9
Samples: 4

Max nTPM: 80.1
Min nTPM: 74.1
Sample A Male 74.8
Sample B Male 74.4
Sample C Female 80.1
Sample D Female 74.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
841 Antisense, RP_Baylor_102965, Mouse strain C57BL/6J (56 days, male) 3.4
842 Antisense, RP_Baylor_102965, Mouse strain C57BL/6J (56 days, male) 0.1
843 Sense, RPS_Baylor_37023, Mouse strain C57BL/6J (56 days, male) 0.0

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