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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
110.2
nTPM
FANTOM5:
108.1
Scaled Tags Per Million
Pig:
35.2
nTPM
Allen mouse:
0.7
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
110.2
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 51.9
2188
Female, age 91, both hemispheres
57.1
2090
Male, age 80, both hemispheres
55.4
1984
Male, age 76, both hemispheres
48.3
2301
Female, age 85, both hemispheres
46.8
Dorsal cochlear nucleus nTPM: 74.7
2370
Male, age 61, both hemispheres
84.1
2058
Male, age 76, both hemispheres
83.6
2802
Male, age 74, right hemisphere
72.1
2378
Male, age 80, both hemispheres
68.3
2187
Female, age 91, both hemispheres
65.5
Dorsal tegmental nucleus nTPM: 81.8
2358
Male, age 61, both hemispheres
98.1
1936
Male, age 76, left hemisphere
79.5
2083
Male, age 80, both hemispheres
75.9
2326
Male, age 74, both hemispheres
73.6
Dorsolateral tegmental area nTPM: 90.7
2141
Male, age 76, both hemispheres
103.1
2751
Female, age 85, both hemispheres
100.2
2337
Male, age 61, both hemispheres
91.2
2360
Male, age 74, both hemispheres
84.6
2654
Male, age 80, both hemispheres
74.7
Kolliker-Fuse nucleus nTPM: 68.3
2315
Male, age 76, right hemisphere
76.1
2163
Male, age 80, both hemispheres
69.2
2793
Female, age 91, left hemisphere
59.7
Lateral lemniscal nuclei nTPM: 61.0
2036
Male, age 80, both hemispheres
68.5
2453
Male, age 74, right hemisphere
63.8
2746
Female, age 85, left hemisphere
61.8
2320
Female, age 91, left hemisphere
57.7
2169
Male, age 76, both hemispheres
53.2
Lateral parabrachial nucleus nTPM: 73.9
2790
Male, age 61, both hemispheres
92.6
2792
Male, age 76, both hemispheres
71.9
2139
Female, age 85, right hemisphere
68.1
2013
Male, age 80, both hemispheres
62.8
Lateral vestibular nucleus nTPM: 66.9
2311
Male, age 80, both hemispheres
67.9
2184
Male, age 76, both hemispheres
66.0
Locus coeruleus nTPM: 110.2
2014
Male, age 55, unknown
145.2
2317
Female, age 72, unknown
122.8
2788
Male, age 74, unknown
109.1
2123
Female, age 91, both hemispheres
106.2
1980
Male, age 76, both hemispheres
105.5
2162
Male, age 80, both hemispheres
95.4
2720
Male, age 74, both hemispheres
87.0
Medial parabrachial nucleus nTPM: 78.7
2156
Male, age 61, both hemispheres
94.5
2463
Female, age 85, right hemisphere
84.7
2786
Male, age 76, both hemispheres
81.6
2170
Female, age 91, both hemispheres
69.3
2854
Male, age 80, both hemispheres
63.4
Medial periolivary nuclei nTPM: 57.4
2791
Male, age 74, right hemisphere
71.4
2081
Male, age 80, both hemispheres
60.6
2458
Female, age 91, both hemispheres
57.8
2171
Female, age 85, both hemispheres
52.8
2063
Male, age 76, both hemispheres
44.5
Motor facial nucleus nTPM: 58.2
2795
Female, age 91, both hemispheres
67.6
2126
Male, age 61, both hemispheres
66.1
2365
Male, age 74, right hemisphere
62.7
2327
Male, age 80, both hemispheres
57.1
2697
Female, age 85, both hemispheres
49.0
2062
Male, age 76, both hemispheres
46.6
Motor trigeminal nucleus nTPM: 66.5
2309
Male, age 76, both hemispheres
80.3
2335
Male, age 61, both hemispheres
72.5
2560
Male, age 74, both hemispheres
61.6
2079
Male, age 80, both hemispheres
60.8
2321
Female, age 91, both hemispheres
57.3
Nuclei of the trapezoid body nTPM: 48.5
2368
Female, age 91, both hemispheres
57.6
2166
Male, age 80, both hemispheres
55.6
2159
Male, age 61, both hemispheres
44.7
2735
Female, age 85, both hemispheres
43.1
1983
Male, age 76, both hemispheres
41.5
Nucleus raphe magnus nTPM: 54.2
2455
Male, age 74, both hemispheres
61.4
2051
Male, age 76, both hemispheres
57.5
2328
Male, age 80, both hemispheres
57.3
2459
Female, age 91, both hemispheres
56.9
2160
Male, age 61, both hemispheres
53.5
2172
Female, age 85, both hemispheres
38.8
Paramedian reticular nucleus nTPM: 72.7
2313
Male, age 61, both hemispheres
84.7
2057
Male, age 80, both hemispheres
78.9
2052
Male, age 76, both hemispheres
73.5
2050
Female, age 85, both hemispheres
53.6
Pedunculopontine tegmental nucleus nTPM: 95.2
1921
Female, age 85, both hemispheres
114.5
2338
Male, age 61, both hemispheres
88.9
2334
Male, age 80, both hemispheres
82.2
Pontine nuclei nTPM: 55.7
2115
Male, age 80, left hemisphere
62.8
2727
Male, age 61, right hemisphere
62.2
2319
Female, age 91, both hemispheres
59.3
2454
Male, age 74, left hemisphere
57.4
2787
Female, age 85, both hemispheres
54.5
1968
Male, age 76, left hemisphere
52.9
1863
Male, age 55, unknown
50.2
2109
Female, age 72, unknown
46.2
Pontine raphe nucleus nTPM: 74.7
2853
Male, age 76, midline
84.7
2122
Female, age 85, midline
64.7
Posteroventral cochlear nucleus nTPM: 65.8
2752
Female, age 85, both hemispheres
75.4
2070
Male, age 76, both hemispheres
71.1
2371
Male, age 61, both hemispheres
69.2
2135
Female, age 91, both hemispheres
60.6
2341
Male, age 80, both hemispheres
52.6
Principal sensory trigeminal nucleus nTPM: 62.0
2324
Male, age 76, both hemispheres
76.4
2008
Male, age 80, left hemisphere
62.2
2367
Female, age 91, left hemisphere
57.6
2158
Male, age 61, both hemispheres
51.7
Reticular pontine nucleus, caudal nTPM: 55.5
2332
Male, age 80, right hemisphere
61.0
2559
Male, age 74, both hemispheres
57.1
2092
Male, age 76, both hemispheres
56.0
2457
Female, age 91, both hemispheres
47.9
Reticular pontine nucleus, oral nTPM: 78.9
1939
Male, age 80, both hemispheres
103.1
2167
Male, age 76, both hemispheres
98.2
2012
Female, age 85, both hemispheres
82.9
2366
Female, age 91, both hemispheres
59.6
2361
Male, age 74, both hemispheres
50.7
Reticulotegmental nucleus nTPM: 72.9
2325
Male, age 76, both hemispheres
98.7
2333
Male, age 80, both hemispheres
67.8
2452
Male, age 74, both hemispheres
63.2
2322
Female, age 91, both hemispheres
61.9
Spinal trigeminal nucleus, oral nTPM: 68.3
1978
Male, age 76, both hemispheres
77.0
2164
Male, age 80, both hemispheres
65.1
2737
Female, age 85, both hemispheres
62.8
Subcoeruleus area nTPM: 73.2
2323
Female, age 91, left hemisphere
84.7
2369
Female, age 85, left hemisphere
74.6
1958
Male, age 80, both hemispheres
74.1
2451
Male, age 74, both hemispheres
72.8
2089
Male, age 76, left hemisphere
59.7
Superior olive nTPM: 61.1
2364
Male, age 74, right hemisphere
69.1
1875
Female, age 85, both hemispheres
60.8
2329
Male, age 80, right hemisphere
60.5
2561
Female, age 91, both hemispheres
60.5
2020
Male, age 76, both hemispheres
54.6
Ventral periolivary nuclei nTPM: 55.8
2794
Female, age 91, left hemisphere
57.0
2023
Male, age 76, both hemispheres
56.2
2130
Female, age 85, both hemispheres
56.0
2165
Male, age 80, both hemispheres
54.2
Ventrolateral tegmental area, A5 NE cell group nTPM: 71.9
2359
Male, age 61, both hemispheres
118.7
2840
Female, age 85, both hemispheres
69.8
2449
Male, age 74, both hemispheres
65.4
2456
Female, age 91, both hemispheres
60.5
1959
Male, age 76, both hemispheres
59.5
2161
Male, age 80, both hemispheres
57.6
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
35.2
Pig sample
Sample description
nTPM
Pons nTPM: 35.2
Samples: 4
Max nTPM: 44.4
Min nTPM: 22.7
Sample A
Female
22.7
Sample B
Female
43.5
Sample C
Male
44.4
Sample D
Male
30.2
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
