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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
74.8
nTPM
HPA Brain:
413.4
nTPM
GTEx:
74.8
nTPM
FANTOM5:
164.9
Scaled Tags Per Million
Pig:
210.7
nTPM
Mouse:
484.6
nTPM
Allen mouse:
21.7
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
413.4
Sample id
Sample description
nTPM
Hippocampus nTPM: 336.7
2148
Female, age 91, left hemisphere
483.3
2621
Female, age 67, right hemisphere
384.6
1898
Male, age 80, left hemisphere
362.0
1855
Male, age 76, left hemisphere
299.6
1911
Female, age 85, right hemisphere
282.6
2529
Female, age 94, left hemisphere
208.4
Dentate gyrus nTPM: 388.3
1927
Female, age 91, both hemispheres
576.5
2530
Female, age 94, left hemisphere
428.2
2531
Female, age 67, both hemispheres
418.1
2010
Male, age 76, both hemispheres
342.0
2528
Male, age 74, both hemispheres
309.4
2246
Female, age 85, both hemispheres
255.9
Entorhinal gyrus nTPM: 220.5
2613
Female, age 94, left hemisphere
313.6
2686
Male, age 75, right hemisphere
235.7
2764
Male, age 80, right hemisphere
226.7
1938
Female, age 85, left hemisphere
207.3
1787
Male, age 76, left hemisphere
186.1
2117
Female, age 91, right hemisphere
153.5
Hippocampus, CA1 nTPM: 413.4
2749
Male, age 80, left hemisphere
808.3
1873
Female, age 85, both hemispheres
427.0
2045
Male, age 76, both hemispheres
350.2
2527
Male, age 74, both hemispheres
310.0
2082
Female, age 91, right hemisphere
171.3
Hippocampus, CA2 nTPM: 287.3
1963
Male, age 80, left hemisphere
502.7
1892
Male, age 76, both hemispheres
379.3
2437
Female, age 94, left hemisphere
287.0
2249
Male, age 74, both hemispheres
221.2
2113
Female, age 91, right hemisphere
169.9
1940
Female, age 85, left hemisphere
164.0
Hippocampus, CA3 nTPM: 394.4
2137
Male, age 80, left hemisphere
589.1
2620
Female, age 94, left hemisphere
577.5
2861
Female, age 67, both hemispheres
455.4
1867
Male, age 76, both hemispheres
302.1
2436
Male, age 74, both hemispheres
221.4
1891
Female, age 85, both hemispheres
220.9
Parahippocampal cortex nTPM: 211.3
2245
Female, age 91, both hemispheres
309.4
1990
Female, age 91, right hemisphere
234.8
2693
Female, age 94, both hemispheres
233.2
2622
Female, age 67, right hemisphere
229.3
1850
Male, age 80, both hemispheres
210.2
2692
Male, age 74, both hemispheres
198.3
1933
Female, age 85, both hemispheres
184.1
2532
Female, age 72, left hemisphere
175.5
2018
Male, age 76, both hemispheres
169.8
2250
Female, age 67, right hemisphere
168.4
Perirhinal gyrus nTPM: 222.6
1847
Female, age 91, left hemisphere
299.5
1794
Male, age 80, right hemisphere
228.6
2521
Female, age 94, right hemisphere
200.8
1841
Female, age 85, right hemisphere
195.6
2848
Male, age 76, right hemisphere
188.5
Subiculum nTPM: 229.8
1901
Male, age 80, both hemispheres
294.5
2438
Female, age 94, left hemisphere
252.9
2729
Female, age 91, right hemisphere
245.8
1977
Female, age 85, both hemispheres
201.7
2042
Male, age 76, both hemispheres
201.7
2619
Male, age 74, both hemispheres
182.4
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
74.8
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 74.8
Samples: 197
Max nTPM: 191.9
Min nTPM: 2.5
Std nTPM: 46.2
Median nTPM: 66.0
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
191.9
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
189.4
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
186.1
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
185.3
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
182.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
180.3
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
177.2
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
171.6
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
171.0
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
168.0
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
163.4
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
159.9
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
155.8
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
155.1
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
152.4
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
150.3
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
145.7
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
144.2
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
143.5
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
140.6
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
136.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
136.2
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
135.6
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
135.5
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
130.8
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
128.0
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
127.8
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
127.1
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
126.8
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
124.3
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
122.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
121.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
121.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
121.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
120.3
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
120.0
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
115.1
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
114.8
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
113.9
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
113.4
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
111.8
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
110.9
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
109.5
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
108.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
108.6
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
107.5
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
107.5
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
107.3
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
107.0
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
106.6
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
106.6
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
106.4
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
106.4
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
105.1
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
105.0
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
104.0
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
102.8
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
102.7
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
101.7
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
101.5
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
99.9
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
98.1
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
95.6
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
95.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
92.9
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
92.3
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
91.4
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
90.5
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
89.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
89.1
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
88.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
87.2
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
84.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
84.7
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
83.6
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
83.4
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
83.1
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
83.1
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
82.0
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
81.6
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
80.9
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
80.8
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
80.8
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
79.5
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
79.5
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
79.4
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
77.7
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
77.5
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
74.4
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
74.1
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
71.2
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
70.5
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
70.2
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
70.1
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
69.6
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
69.0
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
66.9
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
66.2
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
66.0
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
64.9
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
64.2
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
63.8
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
63.4
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
62.6
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
62.3
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
61.3
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
60.7
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
60.7
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
60.5
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
60.5
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
60.0
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
60.0
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
59.3
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
59.3
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
59.2
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
58.7
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
58.6
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
58.5
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
58.1
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
56.9
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
56.4
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
56.3
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
55.7
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
55.4
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
55.1
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
55.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
54.7
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
52.3
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
51.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
51.4
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
49.6
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
48.8
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
48.4
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
48.0
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
47.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
47.1
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
47.1
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
45.9
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
45.2
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
43.2
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
42.4
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
40.8
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
40.6
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
40.3
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
40.1
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
40.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
39.8
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
38.7
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
38.1
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
37.9
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
37.9
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
36.5
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
36.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
36.2
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
34.2
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
33.6
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
33.4
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
32.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
31.0
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
28.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
28.4
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
27.4
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
27.2
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
27.2
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
26.1
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
26.1
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
25.6
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
24.9
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
24.6
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
24.1
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
23.1
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
22.6
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
21.8
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
21.2
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
20.7
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
20.3
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
19.4
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
19.3
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
16.5
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
12.8
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
12.7
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
12.4
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
12.0
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
10.5
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
10.1
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
9.8
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
9.2
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
8.0
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
7.9
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
7.6
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
7.5
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
7.5
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
6.4
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
6.4
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
6.1
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
3.2
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
2.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
484.6
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 266.6
Samples: 4
Max nTPM: 279.0
Min nTPM: 248.4
Sample A
Male
279.0
Sample B
Male
248.4
Sample C
Female
272.9
Sample D
Female
266.0
Hippocampal formation nTPM: 484.6
Samples: 4
Max nTPM: 574.4
Min nTPM: 397.5
Sample A
Male
397.5
Sample B
Male
539.1
Sample C
Female
574.4
Sample D
Female
427.4
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.