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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
10.2
nTPM
HPA Brain:
30.5
nTPM
GTEx:
10.2
nTPM
Pig:
15.3
nTPM
Mouse:
26.8
nTPM
Allen mouse:
3.9
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
30.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 28.5
2219
Male, age 76, both hemispheres
35.0
2019
Male, age 18, unknown
33.0
2411
Female, age 72, unknown
31.1
1830
Male, age 51, unknown
29.6
2666
Male, age 74, left hemisphere
29.0
1827
Male, age 72, unknown
28.2
1833
Male, age 53, unknown
26.8
1870
Female, age 42, unknown
25.6
2586
Male, age 75, left hemisphere
25.4
2828
Female, age 72, unknown
20.9
Dorsal raphe nucleus nTPM: 26.6
2047
Male, age 72, unknown
32.5
2298
Female, age 72, unknown
27.4
2750
Male, age 76, both hemispheres
25.0
1828
Male, age 53, unknown
24.3
2016
Female, age 72, unknown
24.0
Inferior colliculus nTPM: 30.5
1848
Female, age 42, unknown
31.4
2097
Female, age 72, unknown
31.3
2849
Male, age 72, unknown
31.3
1890
Male, age 53, unknown
28.1
Median raphe nucleus nTPM: 28.3
2220
Male, age 76, midline
28.3
Periaquaductal grey, anterior nTPM: 26.0
1947
Male, age 18, unknown
26.3
1795
Male, age 51, unknown
26.1
2502
Female, age 75, unknown
25.4
Periaquaductal grey, dorsal nTPM: 23.6
2464
Female, age 72, unknown
26.4
1840
Male, age 53, unknown
26.3
1831
Male, age 72, unknown
21.8
2850
Male, age 76, both hemispheres
19.7
Periaquaductal grey, lateral nTPM: 24.7
2272
Male, age 74, both hemispheres
26.6
2053
Male, age 18, unknown
24.0
2140
Male, age 76, both hemispheres
23.4
Pretectal area nTPM: 27.3
2407
Male, age 75, both hemispheres
35.9
2273
Male, age 74, both hemispheres
29.0
2007
Male, age 72, unknown
28.9
1816
Male, age 51, unknown
28.0
1817
Female, age 42, unknown
27.8
2825
Male, age 18, unknown
27.3
2316
Male, age 76, right hemisphere
26.3
2224
Female, age 72, unknown
26.1
1944
Female, age 72, unknown
25.1
1815
Male, age 53, unknown
23.4
2667
Female, age 75, unknown
22.2
Red nucleus nTPM: 26.3
2725
Female, age 75, unknown
31.8
2588
Male, age 74, left hemisphere
29.3
2785
Male, age 18, unknown
29.0
2584
Male, age 75, left hemisphere
28.8
1821
Female, age 72, unknown
26.4
1865
Male, age 51, unknown
25.4
2769
Male, age 72, unknown
25.4
1904
Male, age 53, unknown
25.1
2227
Male, age 72, unknown
24.7
1954
Female, age 42, unknown
24.1
2503
Female, age 72, unknown
23.4
2823
Male, age 76, right hemisphere
22.0
Substantia nigra nTPM: 29.4
1941
Male, age 53, unknown
39.5
2241
Male, age 72, unknown
31.8
2590
Female, age 75, unknown
31.0
2409
Female, age 72, unknown
30.7
2665
Male, age 74, both hemispheres
30.3
1916
Female, age 42, unknown
28.1
1889
Female, age 72, unknown
27.4
2583
Male, age 75, right hemisphere
26.3
1851
Male, age 51, unknown
26.1
2699
Male, age 18, unknown
23.0
Superior colliculus nTPM: 27.6
1895
Male, age 76, right hemisphere
36.5
2664
Male, age 75, both hemispheres
30.4
1839
Male, age 51, unknown
28.9
1796
Male, age 53, unknown
28.3
2587
Male, age 74, left hemisphere
27.9
2261
Male, age 18, unknown
26.9
2668
Female, age 75, unknown
26.3
2087
Female, age 72, unknown
25.8
1913
Female, age 42, unknown
23.4
1995
Male, age 72, unknown
21.7
Ventral tegmental area nTPM: 26.4
2223
Female, age 72, unknown
31.0
1915
Female, age 42, unknown
26.7
1942
Male, age 51, unknown
26.2
2410
Female, age 72, unknown
25.3
2021
Male, age 53, unknown
24.8
2218
Male, age 76, both hemispheres
24.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
10.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 10.2
Samples: 139
Max nTPM: 35.8
Min nTPM: 4.0
Std nTPM: 4.6
Median nTPM: 9.1
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
26.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 26.9
Samples: 4
Max nTPM: 27.8
Min nTPM: 25.7
Sample A
Male
26.7
Sample B
Male
27.2
Sample C
Female
25.7
Sample D
Female
27.8
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
