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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:233.4 nTPM
GTEx:233.4 nTPM
FANTOM5:184.6 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

233.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 233.4
Samples: 105

Max nTPM: 548.7
Min nTPM: 39.0
Std nTPM: 116.8
Median nTPM:
452_1 88 years, female 548.7
351_1 91 years, male 529.9
356_1 87 years, female 492.9
353_1 82 years, female 476.8
354_1 81 years, female 471.0
506_1 65 years, male 468.7
218_1 71 years, female 468.3
163_1 78 years, male 466.5
320_1 89 years, female 422.1
295_1 61 years, female 420.3
352_1 62 years, male 405.4
319_1 81 years, male 400.8
406_1 79 years, male 384.9
173_1 67 years, male 379.8
322_1 76 years, male 370.1
349_1 83 years, male 363.0
386_1 76 years, male 362.4
172_1 72 years, female 354.4
321_1 62 years, female 342.7
503_1 68 years, male 340.6
99_1 64 years, male 334.8
264_1 73 years, female 333.4
377_1 82 years, female 332.6
379_1 60 years, male 331.5
237_1 82 years, male 329.3
243_1 75 years, male 319.5
318_1 68 years, male 312.7
293_1 68 years, female 303.1
177_1 74 years, male 294.6
394_1 75 years, female 294.2
376_1 75 years, female 293.7
292_1 71 years, male 275.5
317_1 60 years, male 274.7
350_1 84 years, female 271.7
355_1 70 years, female 266.4
447_1 81 years, male 255.9
137_1 83 years, male 254.8
384_1 83 years, male 245.9
348_1 84 years, male 245.6
251_1 78 years, male 244.7
480_1 63 years, male 238.6
286_1 68 years, female 236.5
316_1 62 years, male 236.1
115_1 83 years, male 235.9
335_1 73 years, female 231.2
291_1 76 years, male 230.3
17_1 71 years, male 225.0
6_1 73 years, female 224.9
4_1 88 years, female 218.4
189_1 76 years, male 217.0
425_1 59 years, female 215.2
145_1 84 years, male 208.4
375_1 74 years, female 204.6
396_1 62 years, male 202.9
389_1 86 years, female 197.5
314_1 67 years, male 196.8
41_1 94 years, female 196.0
288_1 66 years, female 196.0
254_1 77 years, female 195.6
404_1 82 years, female 193.0
347_1 72 years, male 192.3
18_1 88 years, male 190.5
517_1 88 years, male 189.3
405_1 91 years, male 183.2
526_1 61 years, male 182.7
266_1 85 years, male 179.8
229_1 69 years, female 174.0
501_1 88 years, male 170.3
35_1 74 years, female 168.2
518_1 75 years, female 167.1
246_1 77 years, male 160.0
9_1 66 years, female 159.7
265_1 87 years, male 154.0
311_1 78 years, male 153.9
308_1 70 years, female 153.3
153_1 70 years, female 147.1
217_1 76 years, male 146.8
313_1 79 years, female 146.0
109_1 81 years, female 145.5
42_1 85 years, male 144.7
120_1 70 years, female 143.9
324_1 76 years, male 143.4
2_1 77 years, female 142.5
142_1 61 years, female 141.0
126_1 63 years, male 140.3
468_1 89 years, male 127.7
119_1 70 years, female 126.7
499_1 55 years, female 126.5
81_1 67 years, male 126.3
117_1 61 years, male 125.4
139_1 64 years, female 121.0
495_1 57 years, female 119.2
307_1 66 years, female 113.6
315_1 62 years, female 113.5
43_1 64 years, female 95.3
89_1 63 years, male 87.1
162_1 79 years, female 86.3
415_1 77 years, female 80.9
414_1 84 years, female 78.8
32_1 67 years, male 76.0
413_1 59 years, female 71.3
149_1 88 years, male 70.0
490_1 67 years, female 59.7
466_1 57 years, female 56.6
491_1 89 years, female 39.0
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

184.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 184.6
FF:10030-101E3 24-65 years, mixed 184.6

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